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Adding wiki images
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fmalmeida committed Oct 27, 2020
1 parent 8cafb51 commit 67fc5c6
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5 changes: 5 additions & 0 deletions gfftoolbox/convert.py
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$ gff-toolbox convert -i Kp_ref.gff -f json
## Converting a GFF to JSON
## grabbing sequences from fasta
$ gff-toolbox convert -i Kp_ref.gff -f json --fasta Kpneumoniae_genome.fasta
## Converting a GFF to a mongoDB, grabbing sequences from fasta
## This will be added to a mongo db called <db_name> in a collection named <genome_name>
## DBs are writen in the localhost 27027 mongo db connection of mongo shell
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