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First draft of the paper. Lacking some references, but probably won't change much beyond that.

code is in the source_code_and_other_files directory. The code base is a little large, and is still changing, so there's not a good reason to copy it here yet.

I am still working on the code tomorrow Monday, since it's currently in between working states. If the code starts working, I will change the results section of the report.

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