[DO NOT MERGE] Debug coverage issue #1252
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| name: CI (poetry) | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| jobs: | |
| tests_tasks: | |
| name: "Tasks, Python ${{ matrix.python-version }}" | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 30 | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - run: pipx install poetry==1.8.2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: poetry install --with dev --without docs --no-interaction -E fractal-tasks | |
| - name: Test tasks with pytest | |
| env: | |
| COVERAGE_FILE: coverage-data-tasks-${{ matrix.python-version }} | |
| run: poetry run coverage run --debug=config,trace,pathmap -m pytest tests/dev/test_create_schema_for_single_task.py::test_create_schema_for_single_task_usage_1 -s >>file.txt 2>&1 | |
| - run: cat file.txt | |
| - run: grep cellpose file.txt | |
| - name: Upload coverage data | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-data-tasks-${{ matrix.python-version }} | |
| path: coverage-data-tasks-${{ matrix.python-version }}* | |
| coverage: | |
| name: Coverage | |
| runs-on: ubuntu-22.04 | |
| needs: [tests_tasks] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - run: pipx install poetry==1.8.2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: poetry install --with dev | |
| - name: Download data | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-data-* | |
| merge-multiple: true | |
| - name: Combine coverage | |
| # Combines all the downloaded coverage artifacts in a single `.coverage` file, | |
| # which will then be used by `py-cov-action/python-coverage-comment-action`. | |
| # We added this step to replace the variable `MERGE_COVERAGE_FILES: true` | |
| # in the next step, which had started to raise errors | |
| # (https://github.com/fractal-analytics-platform/fractal-server/pull/1725). | |
| run: poetry run coverage combine --debug=config,trace,pathmap coverage-data-* | |
| - name: Add coverage comment to Pull Requests | |
| id: coverage_comment | |
| uses: py-cov-action/python-coverage-comment-action@v3 | |
| with: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| MINIMUM_GREEN: 90 | |
| MINIMUM_ORANGE: 60 | |
| ANNOTATE_MISSING_LINES: true | |
| ANNOTATION_TYPE: notice |