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Define table specifications #582

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merged 35 commits into from
Nov 2, 2023
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0402afc
Always add `fractal_roi_table_version` to table zarr attributes (ref …
tcompa Oct 19, 2023
cc4119e
Add roi-table doc page placeholder
tcompa Oct 19, 2023
76370c2
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Oct 20, 2023
be7d4ae
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Oct 20, 2023
e8db002
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Oct 20, 2023
0c7a9e4
First draft of ROI docs
tcompa Oct 23, 2023
6587653
Add mathjax support in documentation (close #588)
tcompa Oct 23, 2023
fbaf56e
Cross-reference to docs of other projects (close #587)
tcompa Oct 23, 2023
f5969e7
Use `zarr.hierarchy.Group` for type hints (ref #587)
tcompa Oct 23, 2023
08d7e8b
Second draft of ROI-table documentation
tcompa Oct 23, 2023
7097e86
Update CHANGELOG [skip ci]
tcompa Oct 23, 2023
318e9cf
Minor fixes to ROI-tables docs
tcompa Oct 23, 2023
8194716
Fix broken link
tcompa Oct 23, 2023
a592935
Add example of `write_table` [skip ci]
tcompa Oct 23, 2023
93f1044
Add info on table columns [skip ci]
tcompa Oct 23, 2023
ba4e35a
Add notes about Z arbitrary units [skip ci]
tcompa Oct 23, 2023
379637a
Clean up ROI-table future-perspectives section [skip ci]
tcompa Oct 23, 2023
f046e91
Add default-tables docs section [skip ci]
tcompa Oct 23, 2023
aed64cb
Minor fixes to ROI-tables docs [skip ci]
tcompa Oct 23, 2023
d9bf08b
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Oct 26, 2023
b416c9d
Rename table doc page
tcompa Oct 26, 2023
edac9b8
First review of table docs
tcompa Oct 26, 2023
c43a08f
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Oct 26, 2023
a902dc4
BROKEN Stash of current changes
tcompa Oct 27, 2023
be2c725
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Oct 30, 2023
c2d9d52
Update docstring of `convert_ROIs_from_3D_to_2D`
tcompa Oct 30, 2023
49a9b65
Update tables docs
tcompa Oct 30, 2023
1ecc130
Rename `__ROI_TABLE_VERSION__` into `__FRACTAL_TABLE_VERSION__`
tcompa Oct 30, 2023
b8ba5e7
Update CHANGELOG
tcompa Oct 30, 2023
26435d6
Fix feature-table description in specs
tcompa Oct 30, 2023
0def945
Minor updates to table specs [skip ci]
tcompa Oct 30, 2023
e1e44ab
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Oct 30, 2023
d72adb8
Merge branch 'main' into 529-write-docs-page-for-fractal-tasks-core-r…
tcompa Nov 2, 2023
43a622e
Improve tables docs page
tcompa Nov 2, 2023
98514aa
Rephrase sentence about Z size of FOV/well ROIs
tcompa Nov 2, 2023
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4 changes: 4 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,10 @@
* Remove assumptions on ROI-table columns from `get_ROI_table_with_translation` helper function of `calculate_registration_image_based` task (\#591).
* Testing:
* Cache Zenodo data, within GitHub actions (\#585).
* Documentation:
* Define V1 of table specs (\#582).
* Add mathjax support (\#582).
* Add cross-reference inventories to external APIs (\#582).

# 0.13.0

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16 changes: 16 additions & 0 deletions docs/javascripts/mathjax.js
Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
window.MathJax = {
tex: {
inlineMath: [["\\(", "\\)"]],
displayMath: [["\\[", "\\]"]],
processEscapes: true,
processEnvironments: true
},
options: {
ignoreHtmlClass: ".*|",
processHtmlClass: "arithmatex"
}
};

document$.subscribe(() => {
MathJax.typesetPromise()
})
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