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Cellvoyager converter improvements #812

Merged
merged 17 commits into from
Aug 13, 2024
Merged

Cellvoyager converter improvements #812

merged 17 commits into from
Aug 13, 2024

Commits on Aug 12, 2024

  1. Add failing test for arbitrary acquisition name (#782)

    @jluethi
    jluethi committed Aug 12, 2024
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  2. Add suport for arbitrary integers as acquisitions (closes #782)

    @jluethi
    jluethi committed Aug 12, 2024
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  3. Catch non-existant mlf & mrf files better (closes #628)

    @jluethi
    jluethi committed Aug 12, 2024
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  4. Fix omero channel naming for multiplexing

    @jluethi
    jluethi committed Aug 12, 2024
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  5. Switch to pandas-based mrf xml file reading

    @jluethi
    jluethi committed Aug 12, 2024
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  6. Update column naming in metadata parsing

    @jluethi
    jluethi committed Aug 12, 2024
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  7. Add type hints for read_mrf_file

    @jluethi
    jluethi committed Aug 12, 2024
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  8. Drop defusexml dependency (closes #137)

    @jluethi
    jluethi committed Aug 12, 2024
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  9. Add channel exclusion feature (Closes #287, closes 627)

    @jluethi
    jluethi committed Aug 12, 2024
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  10. Update poetry lock file for defusexml removal

    @jluethi
    jluethi committed Aug 12, 2024
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  11. Support multi-plate in cellvoyager converter

    @jluethi
    jluethi committed Aug 12, 2024
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  12. Add exclude_glob_patterns for converter

    @jluethi
    jluethi committed Aug 12, 2024
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  13. fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py

    @jluethi
    jluethi committed Aug 12, 2024
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Commits on Aug 13, 2024

  1. Improve handling when no exclude patterns are specified

    @jluethi
    jluethi committed Aug 13, 2024
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  2. Fix bug in multiplexing task syntax

    @jluethi
    jluethi committed Aug 13, 2024
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  3. Fix no include_patterns handling & add test for exclusion

    @jluethi
    jluethi committed Aug 13, 2024
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  4. Update Changelog

    @jluethi
    jluethi committed Aug 13, 2024
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