update notebooks #131
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: | |
| # run every week (for --pre release tests) | |
| - cron: "0 0 * * 0" | |
| # cancel in-progress runs that use the same workflow and branch | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| check-manifest: | |
| # check-manifest is a tool that checks that all files in version control are | |
| # included in the sdist (unless explicitly excluded) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - run: pipx run check-manifest | |
| test: | |
| name: ${{ matrix.platform }} (${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| # Skip Windows for now It's seems there are some issues with the | |
| # ZarrV3 on Windows | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| # platform: [ubuntu-latest, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: 🐍 Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache-dependency-path: "pyproject.toml" | |
| cache: "pip" | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install -U pip | |
| # if running a cron job, we add the --pre flag to test against pre-releases | |
| python -m pip install .[test] ${{ github.event_name == 'schedule' && '--pre' || '' }} | |
| - name: 🧪 Run Tests | |
| run: pytest | |
| # If something goes wrong with --pre tests, we can open an issue in the repo | |
| - name: 📝 Report --pre Failures | |
| if: failure() && github.event_name == 'schedule' | |
| uses: JasonEtco/create-an-issue@v2 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| PLATFORM: ${{ matrix.platform }} | |
| PYTHON: ${{ matrix.python-version }} | |
| RUN_ID: ${{ github.run_id }} | |
| TITLE: "[test-bot] pip install --pre is failing" | |
| with: | |
| filename: .github/TEST_FAIL_TEMPLATE.md | |
| update_existing: true | |
| - name: Coverage | |
| if: ${{ matrix.python-version == '3.10' }} && ${{ matrix.platform == 'ubuntu-latest' }} | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: /home/runner/work/ngio/ngio/coverage.xml | |
| zarrv3: | |
| name: Test zarr-python v3 compatibility | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: 🐍 Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| cache-dependency-path: "pyproject.toml" | |
| cache: "pip" | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install -U pip | |
| # if running a cron job, we add the --pre flag to test against pre-releases | |
| python -m pip install .[dev3] ${{ github.event_name == 'schedule' && '--pre' || '' }} | |
| - name: 🧪 Run Tests | |
| run: pytest | |
| continue-on-error: true | |
| deploy: | |
| name: Deploy | |
| needs: test | |
| if: success() && startsWith(github.ref, 'refs/tags/') && github.event_name != 'schedule' | |
| runs-on: ubuntu-latest | |
| permissions: | |
| # IMPORTANT: this permission is mandatory for trusted publishing on PyPi | |
| # see https://docs.pypi.org/trusted-publishers/ | |
| id-token: write | |
| # This permission allows writing releases | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: 🐍 Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - name: 👷 Build | |
| run: | | |
| python -m pip install build | |
| python -m build | |
| - name: 🚢 Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| - uses: softprops/action-gh-release@v2 | |
| with: | |
| generate_release_notes: true | |
| files: './dist/*' |