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fractal-analytics-platform · Nov 9, 2024 · 29682b6 · 29682b6
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diff --git a/api/core/index.html b/api/core/index.html
@@ -1149,12 +1149,12 @@ <h3 id="ngio.core.NgffImage" class="doc doc-heading">
             <span class="n">_end_percentile</span> <span class="o">=</span> <span class="n">da</span><span class="o">.</span><span class="n">percentile</span><span class="p">(</span>
                 <span class="n">data</span><span class="p">,</span> <span class="n">end_percentile</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;nearest&quot;</span>
             <span class="p">)</span><span class="o">.</span><span class="n">compute</span><span class="p">()</span>
-            <span class="n">channel</span><span class="o">.</span><span class="n">extra_fields</span><span class="p">[</span><span class="s2">&quot;window&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
-                <span class="s2">&quot;start&quot;</span><span class="p">:</span> <span class="n">_start_percentile</span><span class="p">,</span>
-                <span class="s2">&quot;end&quot;</span><span class="p">:</span> <span class="n">_end_percentile</span><span class="p">,</span>
-                <span class="s2">&quot;min&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
-                <span class="s2">&quot;max&quot;</span><span class="p">:</span> <span class="n">max_dtype</span><span class="p">,</span>
-            <span class="p">}</span>
+
+            <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">start</span> <span class="o">=</span> <span class="n">_start_percentile</span>
+            <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">end</span> <span class="o">=</span> <span class="n">_end_percentile</span>
+            <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">min</span> <span class="o">=</span> <span class="mi">0</span>
+            <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">max</span> <span class="o">=</span> <span class="n">max_dtype</span>
+
             <span class="n">ngio_logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
                 <span class="sa">f</span><span class="s2">&quot;Updated window for channel </span><span class="si">{</span><span class="n">channel</span><span class="o">.</span><span class="n">label</span><span class="si">}</span><span class="s2">. &quot;</span>
                 <span class="sa">f</span><span class="s2">&quot;Start: </span><span class="si">{</span><span class="n">start_percentile</span><span class="si">}</span><span class="s2">, End: </span><span class="si">{</span><span class="n">end_percentile</span><span class="si">}</span><span class="s2">&quot;</span>
@@ -1822,12 +1822,12 @@ <h4 id="ngio.core.NgffImage.update_omero_window" class="doc doc-heading">
         <span class="n">_end_percentile</span> <span class="o">=</span> <span class="n">da</span><span class="o">.</span><span class="n">percentile</span><span class="p">(</span>
             <span class="n">data</span><span class="p">,</span> <span class="n">end_percentile</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;nearest&quot;</span>
         <span class="p">)</span><span class="o">.</span><span class="n">compute</span><span class="p">()</span>
-        <span class="n">channel</span><span class="o">.</span><span class="n">extra_fields</span><span class="p">[</span><span class="s2">&quot;window&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
-            <span class="s2">&quot;start&quot;</span><span class="p">:</span> <span class="n">_start_percentile</span><span class="p">,</span>
-            <span class="s2">&quot;end&quot;</span><span class="p">:</span> <span class="n">_end_percentile</span><span class="p">,</span>
-            <span class="s2">&quot;min&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
-            <span class="s2">&quot;max&quot;</span><span class="p">:</span> <span class="n">max_dtype</span><span class="p">,</span>
-        <span class="p">}</span>
+
+        <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">start</span> <span class="o">=</span> <span class="n">_start_percentile</span>
+        <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">end</span> <span class="o">=</span> <span class="n">_end_percentile</span>
+        <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">min</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="n">channel</span><span class="o">.</span><span class="n">channel_visualisation</span><span class="o">.</span><span class="n">max</span> <span class="o">=</span> <span class="n">max_dtype</span>
+
         <span class="n">ngio_logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span>
             <span class="sa">f</span><span class="s2">&quot;Updated window for channel </span><span class="si">{</span><span class="n">channel</span><span class="o">.</span><span class="n">label</span><span class="si">}</span><span class="s2">. &quot;</span>
             <span class="sa">f</span><span class="s2">&quot;Start: </span><span class="si">{</span><span class="n">start_percentile</span><span class="si">}</span><span class="s2">, End: </span><span class="si">{</span><span class="n">end_percentile</span><span class="si">}</span><span class="s2">&quot;</span>
@@ -1870,7 +1870,7 @@ <h4 id="ngio.core.NgffImage.update_omero_window" class="doc doc-heading">
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 
@@ -1880,7 +1880,7 @@ <h4 id="ngio.core.NgffImage.update_omero_window" class="doc doc-heading">
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 

diff --git a/getting-started/index.html b/getting-started/index.html
@@ -676,7 +676,7 @@ <h2 id="example-usage">Example Usage</h2>
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 
@@ -686,7 +686,7 @@ <h2 id="example-usage">Example Usage</h2>
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 

diff --git a/index.html b/index.html
@@ -793,7 +793,7 @@ <h2 id="license">License</h2>
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 
@@ -803,7 +803,7 @@ <h2 id="license">License</h2>
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 

diff --git a/notebooks/basic_usage/index.html b/notebooks/basic_usage/index.html
@@ -1836,7 +1836,7 @@ <h2 id="derive-a-new-ngffimage">Derive a new NgffImage<a class="anchor-link" hre
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 
@@ -1846,7 +1846,7 @@ <h2 id="derive-a-new-ngffimage">Derive a new NgffImage<a class="anchor-link" hre
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 

diff --git a/notebooks/image/index.html b/notebooks/image/index.html
@@ -2169,7 +2169,7 @@ <h2 id="creating-a-new-table">Creating a new table<a class="anchor-link" href="#
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 
@@ -2179,7 +2179,7 @@ <h2 id="creating-a-new-table">Creating a new table<a class="anchor-link" href="#
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 

diff --git a/notebooks/processing/index.html b/notebooks/processing/index.html
@@ -1967,7 +1967,7 @@ <h3 id="step-2-run-the-workflow">step 2: Run the workflow<a class="anchor-link"
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 
@@ -1977,7 +1977,7 @@ <h3 id="step-2-run-the-workflow">step 2: Run the workflow<a class="anchor-link"
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 8, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 9, 2024</span>
   </span>
 
 

diff --git a/search/search_index.json b/search/search_index.json
diff --git a/sitemap.xml b/sitemap.xml
@@ -2,26 +2,26 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/</loc>
-         <lastmod>2024-11-08</lastmod>
+         <lastmod>2024-11-09</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/getting-started/</loc>
-         <lastmod>2024-11-08</lastmod>
+         <lastmod>2024-11-09</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/api/core/</loc>
-         <lastmod>2024-11-08</lastmod>
+         <lastmod>2024-11-09</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/notebooks/basic_usage/</loc>
-         <lastmod>2024-11-08</lastmod>
+         <lastmod>2024-11-09</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/notebooks/image/</loc>
-         <lastmod>2024-11-08</lastmod>
+         <lastmod>2024-11-09</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/notebooks/processing/</loc>
-         <lastmod>2024-11-08</lastmod>
+         <lastmod>2024-11-09</lastmod>
     </url>
 </urlset>
diff --git a/sitemap.xml.gz b/sitemap.xml.gz