Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Feature Request - Force calling FORMAT header lines #466

Closed
ACEnglish opened this issue Apr 4, 2024 · 3 comments
Closed

Feature Request - Force calling FORMAT header lines #466

ACEnglish opened this issue Apr 4, 2024 · 3 comments
Assignees

Comments

@ACEnglish
Copy link

When force calling, sniffles populates the fields FORMAT/GQ,FORMAT/DR,FORMAT/DV but does not add tags defining these fields to the header. For example ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Phred scaled quality of genotype">. If these header lines aren't present in the input vcf then the output vcf is invalid.

@fritzsedlazeck
Copy link
Owner

Right I think @zhengxinchang has a code request for that.
Thanks for this
Fritz

@hermannromanek hermannromanek self-assigned this Apr 4, 2024
@hermannromanek
Copy link
Collaborator

Yes, it's #451

I'll merge it once #465 is fixed.

@ACEnglish
Copy link
Author

My bad. I didn't search for issues/pulls before posting this. I'll close this issue since the pr can do the tracking

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants