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When force calling, sniffles populates the fields FORMAT/GQ,FORMAT/DR,FORMAT/DV but does not add tags defining these fields to the header. For example ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Phred scaled quality of genotype">. If these header lines aren't present in the input vcf then the output vcf is invalid.
The text was updated successfully, but these errors were encountered:
When force calling, sniffles populates the fields FORMAT/GQ,FORMAT/DR,FORMAT/DV but does not add tags defining these fields to the header. For example
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Phred scaled quality of genotype">
. If these header lines aren't present in the input vcf then the output vcf is invalid.The text was updated successfully, but these errors were encountered: