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feat: use bwa-aln-interactive and upgrade developer's docs #32

Merged
merged 17 commits into from
Oct 16, 2024
Merged

feat: use bwa-aln-interactive and upgrade developer's docs #32

merged 17 commits into from
Oct 16, 2024
+196 −216

Commits on Sep 20, 2024

  1. feat: use bwa-aln-interactive and upgrade developer's docs

    @clintval
    clintval committed Sep 20, 2024
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  2. feat: remove 'hack'

    @clintval
    clintval committed Sep 20, 2024
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Commits on Oct 4, 2024

  1. fix: use more newlines for the Bioconda bwa-aln-interactive

    @clintval
    clintval committed Oct 4, 2024
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  2. Merge remote-tracking branch 'origin/main' into cv_docs_upgrade

    @clintval
    clintval committed Oct 4, 2024
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  3. chore: add back GHA checkout

    @clintval
    clintval committed Oct 4, 2024
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  4. chore: update stale URLs in docs

    @clintval
    clintval committed Oct 4, 2024
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  5. chore: fix up Markdown rendering

    @clintval
    clintval committed Oct 4, 2024
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Commits on Oct 7, 2024

  1. docs: change to new poetry syntax

    @clintval
    clintval committed Oct 7, 2024
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  2. chore: try out poetry install GHA

    @clintval
    clintval committed Oct 7, 2024
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  3. chore: make it clear poetry installs outside the mamba env

    @clintval
    clintval committed Oct 7, 2024
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  4. fix: revert order of install

    @clintval
    clintval committed Oct 7, 2024
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  5. fix: use bash shell with conda

    @clintval
    clintval committed Oct 7, 2024
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  6. docs: add a line comment about newlines

    @clintval
    clintval committed Oct 7, 2024
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Commits on Oct 15, 2024

  1. chore: satisfy the coderabbit

    @clintval
    clintval committed Oct 15, 2024
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  2. Merge remote-tracking branch 'origin/main' into cv_docs_upgrade

    @clintval
    clintval committed Oct 15, 2024
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Commits on Oct 16, 2024

  1. Update prymer/offtarget/bwa.py 

    Co-authored-by: Tim Fennell <[email protected]>
    @clintval @tfenne
    clintval and tfenne authored Oct 16, 2024
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  2. chore: fix line limit lint

    @clintval
    clintval committed Oct 16, 2024
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