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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 215 111

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 195 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 96 91

  4. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 83 36

  5. task-execution-schemas task-execution-schemas Public

    82 29

  6. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    82 39

Repositories

Showing 10 of 125 repositories
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 3 Apache-2.0 2 10 (2 issues need help) 0 Updated Jan 31, 2025
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 53 Apache-2.0 29 45 (1 issue needs help) 4 Updated Jan 30, 2025
  • htsget-compliance Public

    Compliance testing for htsget deployments

    ga4gh/htsget-compliance’s past year of commit activity
    Python 1 Apache-2.0 2 0 1 Updated Jan 29, 2025
  • data-repository-service-schemas Public

    A repository for the schemas used for the Data Repository Service.

    ga4gh/data-repository-service-schemas’s past year of commit activity
    60 Apache-2.0 53 64 23 Updated Jan 28, 2025
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    ga4gh/va-spec-python’s past year of commit activity
    Python 1 Apache-2.0 1 5 1 Updated Jan 24, 2025
  • gks-portal Public
    ga4gh/gks-portal’s past year of commit activity
    0 MIT 1 5 0 Updated Jan 24, 2025
  • cat-vrs-python Public

    GA4GH Categorical Variation Representation Python Implementation

    ga4gh/cat-vrs-python’s past year of commit activity
    Python 1 Apache-2.0 3 1 0 Updated Jan 23, 2025
  • schema-registry Public

    Repository of schemas to be loaded by the schema registry API

    ga4gh/schema-registry’s past year of commit activity
    0 Apache-2.0 0 2 1 Updated Jan 21, 2025
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    ga4gh/quality-control-wgs’s past year of commit activity
    Jupyter Notebook 14 Apache-2.0 3 4 2 Updated Jan 21, 2025
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 18 Apache-2.0 5 120 (2 issues need help) 4 Updated Jan 15, 2025
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