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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 142 47

  2. OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 50 10

  3. FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 44 22

  4. absplice Public

    Python 38 4

  5. scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 21 3

Repositories

Showing 10 of 53 repositories
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 142 MIT 47 39 4 Updated Apr 18, 2025
  • PROTRIDER Public
    Python 2 1 0 0 Updated Apr 16, 2025
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 50 MIT 10 14 1 Updated Apr 13, 2025
  • AbExp Public
    Python 6 MIT 1 0 0 Updated Apr 11, 2025
  • funcRVP Public

    Bayesian genotype to phenotype model leveraging gene embeddings

    Jupyter Notebook 1 MIT 0 0 0 Updated Apr 7, 2025
  • scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 21 MIT 3 0 2 Updated Mar 31, 2025
  • scooby_reproducibility Public
    Jupyter Notebook 4 MIT 0 0 0 Updated Mar 18, 2025
  • dependencies_DNALM Public

    Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements

    Jupyter Notebook 12 MIT 1 3 0 Updated Mar 13, 2025
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 44 MIT 22 25 0 Updated Mar 4, 2025
  • drop_demo_data Public
    0 1 0 0 Updated Mar 2, 2025
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