Copy metadata to galaxy.json in archive_to_directory converter

galaxyproject · Oct 11, 2024 · 28ca375 · 28ca375
1 parent ee24ca3
commit 28ca375
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/lib/galaxy/datatypes/converters/archive_to_directory.xml b/lib/galaxy/datatypes/converters/archive_to_directory.xml
@@ -4,6 +4,7 @@
         <requirement type="package" version="23.2.1">galaxy-util</requirement>
     </requirements>
     <command><![CDATA[
+        cp '$metadata_json' galaxy.json &&
         mkdir '$output1.files_path' &&
         cd '$output1.files_path' &&
         python -c "from galaxy.util.compression_utils import CompressedFile; CompressedFile('$input1').extract('.')"
@@ -22,8 +23,8 @@
             <option value="directory">directory</option>
         </param>
     </inputs>
-    <outputs provided_metadata_file="metadata_json">
-        <data format="directory" name="output1"/>
+    <outputs>
+        <data format="auto" name="output1"/>
     </outputs>
     <tests>
         <test>