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add test for filters in statically defined collection elements
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<tool id="collection_creates_pair_filter" name="collection_creates_pair_filter" version="0.1.0"> | ||
<description>test if filters in statically defined collection elements work</description> | ||
<command> | ||
for i in A B C D; do | ||
echo "\$i" > "\$i".txt; | ||
done | ||
</command> | ||
<inputs> | ||
<param name="decide" type="boolean"/> | ||
</inputs> | ||
<outputs> | ||
<collection name="paired_output" format="txt" type="paired" label="Split Pair"> | ||
<data name="forward" from_work_dir="A.txt"> | ||
<filter>decide</filter> | ||
</data> | ||
<data name="reverse" from_work_dir="B.txt"> | ||
<filter>decide</filter> | ||
</data> | ||
<data name="forward" from_work_dir="C.txt"> | ||
<filter>not decide</filter> | ||
</data> | ||
<data name="reverse" from_work_dir="D.txt"> | ||
<filter>not decide</filter> | ||
</data> | ||
</collection> | ||
</outputs> | ||
<tests> | ||
<test expect_num_outputs="3"> | ||
<param name="decide" value="true" /> | ||
<output_collection name="paired_output" type="paired"> | ||
<element name="forward" ftype="txt"> | ||
<assert_contents> | ||
<has_line line="A" /> | ||
</assert_contents> | ||
</element> | ||
<element name="reverse" ftype="txt"> | ||
<assert_contents> | ||
<has_line line="B" /> | ||
</assert_contents> | ||
</element> | ||
</output_collection> | ||
</test> | ||
<test expect_num_outputs="3"> | ||
<param name="decide" value="false" /> | ||
<output_collection name="paired_output" type="paired"> | ||
<element name="forward" ftype="txt"> | ||
<assert_contents> | ||
<has_line line="C" /> | ||
</assert_contents> | ||
</element> | ||
<element name="reverse" ftype="txt"> | ||
<assert_contents> | ||
<has_line line="D" /> | ||
</assert_contents> | ||
</element> | ||
</output_collection> | ||
</test> | ||
</tests> | ||
</tool> |
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