Adjust test tool and datatype config to best practices

Co-authored-by: Björn Grüning <[email protected]>
galaxyproject · Feb 26, 2025 · b7238a0 · b7238a0
1 parent c27cec4
commit b7238a0
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/test/functional/tools/create_directory_index.xml b/test/functional/tools/create_directory_index.xml
@@ -1,7 +1,7 @@
 <tool id="create_directory_index" name="Create directory index" version="1.0" profile="24.2">
     <command><![CDATA[
 mkdir '$index.extra_files_path' &&
-cp '$reference' '$index.extra_files_path'/1.fasta
+cp '$reference' '$index.extra_files_path/1.fasta'
     ]]></command>
     <inputs>
         <param name="reference" type="data" label="Select a genome to index" help="Build an index for this FASTA sequence." format="fasta"/>
@@ -12,7 +12,7 @@ cp '$reference' '$index.extra_files_path'/1.fasta
     <tests>
         <test>
             <param name="reference" value="1.fasta"></param>
-            <output name="index">
+            <output name="index" ftype="bwa_mem2_index">
                 <extra_files name="1.fasta" type="file" value="1.fasta"></extra_files>
             </output>
         </test>

diff --git a/test/functional/tools/sample_datatypes_conf.xml b/test/functional/tools/sample_datatypes_conf.xml
@@ -60,7 +60,7 @@
     </datatype>
     <datatype extension="directory" type="galaxy.datatypes.data:Directory">
     </datatype>
-    <datatype extension="bwa_mem2_index" display_in_upload="true" type="galaxy.datatypes.data:Directory"/>
+    <datatype extension="bwa_mem2_index" display_in_upload="true" type="galaxy.datatypes.data:Directory" subclass="true"/>
     <datatype extension="h5" type="galaxy.datatypes.binary:H5" mimetype="application/octet-stream" display_in_upload="true"/>
   </registration>
 </datatypes>
diff --git a/test/functional/tools/use_directory_index.xml b/test/functional/tools/use_directory_index.xml
@@ -1,6 +1,6 @@
 <tool id="use_directory_index" name="Uses directory index" version="1.0" profile="24.2">
     <command><![CDATA[
-cp '$reference.extra_files_path'/1.fasta '$output'
+cp '$reference.extra_files_path/1.fasta' '$output'
     ]]></command>
     <inputs>
         <param name="reference" type="data" label="Select an index" format="bwa_mem2_index"/>