Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Structured tool state #17393

Draft
wants to merge 32 commits into
base: dev
Choose a base branch
from
Draft

Structured tool state #17393

wants to merge 32 commits into from

Commits on Oct 18, 2024

  1. tool input format test fixutre

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    b797090 View commit details
    Browse the repository at this point in the history

  2. More tool tests.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    158620d View commit details
    Browse the repository at this point in the history

  3. Refactor Tool._populate for reuse of hook checks.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    4f76561 View commit details
    Browse the repository at this point in the history

  4. Spelling error.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    7c79add View commit details
    Browse the repository at this point in the history

  5. Refactor for reuse in galaxy.tool_util.parameters.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    856001f View commit details
    Browse the repository at this point in the history

  6. Refactor encode/decode for reuse.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    fe39357 View commit details
    Browse the repository at this point in the history

  7. Use get_color_value in basic.py.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    bc9cc92 View commit details
    Browse the repository at this point in the history

  8. models for tool landing request state...

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    aca7b5c View commit details
    Browse the repository at this point in the history

  9. Pydantic models for parameter validators.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    cc475aa View commit details
    Browse the repository at this point in the history

  10. Fix param models for dynamic options and truevalue/falsevalue

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    66a1a3b View commit details
    Browse the repository at this point in the history

  11. Update tool shed schema for parameter model changes.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    043181c View commit details
    Browse the repository at this point in the history

  12. Cleanup stock tool sources parsed in galaxy.tools.stock. 

    Was causing a randomly failing test.
    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    336d450 View commit details
    Browse the repository at this point in the history

  13. Refactor complex method for clarity.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    6cbe6f3 View commit details
    Browse the repository at this point in the history

  14. Numerous fixes for 21.01 parameters.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    ea06e9f View commit details
    Browse the repository at this point in the history

  15. Do not skip CI tests on missing tools.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    61c531b View commit details
    Browse the repository at this point in the history

  16. Cleaner startup when there are tool problems.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    ac447e8 View commit details
    Browse the repository at this point in the history

  17. Improved error messages when there are problems generating tool tests.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    23a9b10 View commit details
    Browse the repository at this point in the history

  18. Tool Request API...

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    b0a9f7c View commit details
    Browse the repository at this point in the history

  19. Refactoring that lets the tool request API work.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    8bb1108 View commit details
    Browse the repository at this point in the history

  20. Blah....

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    5e882d4 View commit details
    Browse the repository at this point in the history

  21. Rebuild schema for tool request APIs...

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    1a2ec24 View commit details
    Browse the repository at this point in the history

  22. Tool Landing API...

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    bbbdc54 View commit details
    Browse the repository at this point in the history

  23. Regenerate schema

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    f3c9953 View commit details
    Browse the repository at this point in the history

  24. More json schema API options...

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    640e0b7 View commit details
    Browse the repository at this point in the history

  25. Update API schema for more tool state schema APIs...

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    8c5e5c1 View commit details
    Browse the repository at this point in the history

  26. Latest prototype of a minimal workflow UI.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    563de46 View commit details
    Browse the repository at this point in the history

  27. gxformat2 abstraction layer...

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    d60fe61 View commit details
    Browse the repository at this point in the history

  28. Named type for parsed tool versions.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    f03fd64 View commit details
    Browse the repository at this point in the history

  29. Workflow tool state validation plumbing.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    9fbbbd0 View commit details
    Browse the repository at this point in the history

  30. [WIP] Use tool request API from the tool form.

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    f940040 View commit details
    Browse the repository at this point in the history

  31. WIP: maybe dont want, more ps testing

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    c972feb View commit details
    Browse the repository at this point in the history

  32. Extra debugging we dont' want

    @jmchilton
    jmchilton committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    54e0da4 View commit details
    Browse the repository at this point in the history