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[24.0] Ignore converted datasets in invalid input states #18850

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mvdbeek
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@mvdbeek mvdbeek commented Sep 19, 2024

Fixes a bug reported by @jennaj where using an input dataset from a history import (which contains implicitly converted datasets in discarded state) in an input that would require that exact same implicit conversion would fail with Job output deleted by user before job completed.

This will make the whole implicit coversion system much more robust, since we didn't even exclude datasets in error state, so as soon as one conversion failed ... you'd be stuck.

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  • I've included appropriate automated tests.
  • This is a refactoring of components with existing test coverage.
  • Instructions for manual testing are as follows:
    1. [add testing steps and prerequisites here if you didn't write automated tests covering all your changes]

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@github-actions github-actions bot added this to the 24.1 milestone Sep 19, 2024
Fixes a bug reported by @jennaj where using an input dataset from a history
import (which contains implicitly converted datasets in discarded state)
in an input that would require that exact same implicit conversion
would fail with `Job output deleted by user before job completed`.

This will make the whole implicit coversion system much more robust,
since we didn't even exclude datasets in error state, so as soon as one
conversion failed ... you'd be stuck.
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mvdbeek commented Sep 19, 2024

Test failures are all unrelated

@mvdbeek mvdbeek requested a review from a team September 19, 2024 12:43
@davelopez davelopez merged commit 1c000ea into galaxyproject:release_24.0 Sep 19, 2024
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