Galaxy labs

[neoformit]

In collaboration with @nomadscientist

Overview

This PR introduces the "subdomains" folder to codex for globally-centralized Galaxy Lab webpage content.

Community members will then be able to make changes to their lab page through pull requests to this repo.
Lab pages can be requested by a rendering engine hosted at https://site.usegalaxy.org.au/lab/export. The rendering engine will soon be deployed as a standalone service.

Warning

The files under subdomains/singlecell/ will be used to render production services (Galaxy Labs).
Changes to these file paths will break production services. These paths should never be changed without
updating consumers (e.g. usegalaxy.org, usegalaxy.eu, usegalaxy.org.au)

Summary of changes

• subdomains/README.md documents process for creating a new Galaxy Lab
• subdomains/scripts/ for processing tool installation metadata
• Add singlecell lab at subdomains/singlecell/ (currently deployed on https://singlecell.usegalaxy.org.au)

Future direction

Once the repo has been re-organised a bit, we will refactor subdomains as subfolders in the relevant community folder.

e.g:

single-cell/
├── lab/
└── other_stuff/
microgalaxy/
├── lab/
└── other_stuff/

[paulzierep]

Can you fix the linting ?
I guess the subdomains should be in the same folder as the results ? I.e.: https://github.com/galaxyproject/galaxy_codex/tree/results/spoc
For now, we could add it here, but then refactor when Bérénice is back. Wdyt ?

Can you add instructions on how to render / see this locally ...?

[paulzierep]

Can you add doc strings as in the other scripts for the functions?

[paulzierep]

Where do these files come from ? I assume from the results.csv / json ?