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Add JSON file to tool sublist archive #177

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Sep 25, 2024
Merged

Add JSON file to tool sublist archive #177

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4 changes: 3 additions & 1 deletion .github/workflows/fetch_filter_resources.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,7 @@ jobs:
uses: actions/upload-artifact@v4
with:
name: tools-${{ matrix.subset }}
path: communities/all/resources/${{ matrix.subset }}_tools.tsv
path: communities/all/resources/${{ matrix.subset }}_tools.*
merge-fetch-filter:
runs-on: ubuntu-20.04
needs: fetch-tools-stepwise
Expand All @@ -91,6 +91,8 @@ jobs:
pattern: tools-*
merge-multiple: true
path: communities/all/resources/
- name: Display structure of downloaded files
run: ls -R communities/all/resources/
- name: Merge all tools
run: | #merge files with only one header -> https://stackoverflow.com/questions/16890582/unixmerge-multiple-csv-files-with-same-header-by-keeping-the-header-of-the-firs; map(.[]) -> https://stackoverflow.com/questions/42011086/merge-arrays-of-json (get flat array, one tool per entry)
awk 'FNR==1 && NR!=1{next;}{print}' communities/all/resources/repositories*.list_tools.tsv > communities/all/resources/tools.tsv
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