Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions workflows/scRNAseq/fastq-to-matrix-10x/CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,10 @@
# Changelog

## [0.6.4] - 2025-10-13

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4`

## [0.6.3] - 2025-06-09

### Automatic update
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@
"top": 0
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\"}",
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "eea58879-4368-4edf-ad0a-2dbd91de2db7",
Expand Down Expand Up @@ -188,7 +188,7 @@
"top": 493.57719175292976
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\"}",
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "4a52f2cf-ee11-47ac-9f24-ce5e49b8434e",
Expand All @@ -215,7 +215,7 @@
"top": 593.5771917529298
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"format\": [\"csv\"], \"tag\": \"\", \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"format\": [\"csv\"], \"tag\": \"\", \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "dce97235-a4ba-4bfd-9d1f-60d3942f624b",
Expand Down Expand Up @@ -347,7 +347,7 @@
"top": 0
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\"}",
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "eea58879-4368-4edf-ad0a-2dbd91de2db7",
Expand Down Expand Up @@ -588,7 +588,7 @@
},
"6": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4",
"errors": null,
"id": 6,
"input_connections": {
Expand Down Expand Up @@ -630,15 +630,15 @@
"output_name": "stats"
}
},
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3",
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4",
"tool_shed_repository": {
"changeset_revision": "31c42a2c02d3",
"changeset_revision": "e4dd4c0622f6",
"name": "multiqc",
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.27+galaxy3",
"tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"png_plots\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.27+galaxy4",
"type": "tool",
"uuid": "a16bf20e-2bc9-45e7-a0a3-b5590212b973",
"when": null,
Expand Down Expand Up @@ -836,7 +836,7 @@
"top": 0
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "3e312de3-0895-4b46-ac51-9c1c7e341194",
Expand All @@ -863,7 +863,7 @@
"top": 126
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "4f8d1d99-0adc-40a8-a53b-ce9c1c614aeb",
Expand All @@ -890,7 +890,7 @@
"top": 249
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "266958e3-aacf-4b7f-8f74-6cbcdd5db4c0",
Expand Down Expand Up @@ -1317,7 +1317,7 @@
}
},
"tags": [],
"uuid": "5d25bb47-b930-4f69-9cf8-f7a4e4fa3ce5"
"uuid": "91ed78c2-b169-4cb7-86f6-82428103efbe"
},
"tool_id": null,
"type": "subworkflow",
Expand All @@ -1333,7 +1333,7 @@
}
},
"tags": [],
"uuid": "c054619f-8dab-4b65-9615-ace678a13735"
"uuid": "bfd463af-d055-4fe5-acc9-05104d3d351a"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -1650,7 +1650,7 @@
"top": 0
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "3e312de3-0895-4b46-ac51-9c1c7e341194",
Expand All @@ -1677,7 +1677,7 @@
"top": 126
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "4f8d1d99-0adc-40a8-a53b-ce9c1c614aeb",
Expand All @@ -1704,7 +1704,7 @@
"top": 249
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "266958e3-aacf-4b7f-8f74-6cbcdd5db4c0",
Expand Down Expand Up @@ -2131,7 +2131,7 @@
}
},
"tags": [],
"uuid": "7fcbdfc0-9f5c-42be-b235-fe7c46c2c40a"
"uuid": "12a88951-e313-421f-abfe-98a61eaa4269"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -2202,7 +2202,7 @@
"tags": [
"name:single-cell"
],
"uuid": "c54841b3-902d-4949-93ca-f6882c12c4dd",
"uuid": "28c6d442-80a3-45cf-ae5a-d6e386733b55",
"version": 1,
"release": "0.6.3"
"release": "0.6.4"
}
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@
"top": 0
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\"}",
"tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list:paired\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "eea58879-4368-4edf-ad0a-2dbd91de2db7",
Expand Down Expand Up @@ -294,7 +294,7 @@
},
"6": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4",
"errors": null,
"id": 6,
"input_connections": {
Expand Down Expand Up @@ -336,15 +336,15 @@
"output_name": "stats"
}
},
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3",
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4",
"tool_shed_repository": {
"changeset_revision": "31c42a2c02d3",
"changeset_revision": "e4dd4c0622f6",
"name": "multiqc",
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.27+galaxy3",
"tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"png_plots\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.27+galaxy4",
"type": "tool",
"uuid": "a16bf20e-2bc9-45e7-a0a3-b5590212b973",
"when": null,
Expand Down Expand Up @@ -542,7 +542,7 @@
"top": 0
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "3e312de3-0895-4b46-ac51-9c1c7e341194",
Expand All @@ -569,7 +569,7 @@
"top": 126
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "4f8d1d99-0adc-40a8-a53b-ce9c1c614aeb",
Expand All @@ -596,7 +596,7 @@
"top": 249
},
"tool_id": null,
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
"tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\", \"fields\": null}",
"tool_version": null,
"type": "data_collection_input",
"uuid": "266958e3-aacf-4b7f-8f74-6cbcdd5db4c0",
Expand Down Expand Up @@ -1023,7 +1023,7 @@
}
},
"tags": [],
"uuid": "a6ed9cb0-9618-4c23-a0cf-40d45d4a37b3"
"uuid": "0908c40f-cd01-4f4d-aeab-525adb724f11"
},
"tool_id": null,
"type": "subworkflow",
Expand All @@ -1041,7 +1041,7 @@
"tags": [
"name:single-cell"
],
"uuid": "677cbe1a-f944-4c6f-8a7e-118030b1d567",
"uuid": "f5a512bc-7ce5-43db-9f14-0e87ae38cdee",
"version": 1,
"release": "0.6.3"
"release": "0.6.4"
}