Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

WIP: Update and test fastx-tools #375

Open
wants to merge 12 commits into
base: main
Choose a base branch
from
Open

WIP: Update and test fastx-tools #375

wants to merge 12 commits into from

Commits on Jan 1, 2017

  1. Test and update fastx tools

    @bgruening
    bgruening committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    a81f7d5 View commit details
    Browse the repository at this point in the history

  2. Upgrade to newer version of fastx 

    Unfortunately tests are missing
    @bgruening
    bgruening committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    a554313 View commit details
    Browse the repository at this point in the history

  3. Add tests for the remaining fastx tools

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    459ff1c View commit details
    Browse the repository at this point in the history

  4. Explicitly set -Q for all non-cs fastq variants 

    -Q 33 is the default, but it needs to be set to -Q 64 for fastqillumina
and fastqsolexa.
    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    8865acd View commit details
    Browse the repository at this point in the history

  5. Close command tag

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    0c1f99d View commit details
    Browse the repository at this point in the history

  6. Fix command tag ... again

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    f4e5d27 View commit details
    Browse the repository at this point in the history

  7. Fix requirements

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    f206706 View commit details
    Browse the repository at this point in the history

  8. Don't fail with gnuplot warnings

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    361f286 View commit details
    Browse the repository at this point in the history

  9. Use simsize comparison for png

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    0024992 View commit details
    Browse the repository at this point in the history

  10. Retab certain fastx tools, remove duplicate macro imports

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    3fdc28d View commit details
    Browse the repository at this point in the history

  11. Retab more fastx tools

    @mvdbeek
    mvdbeek committed Jan 1, 2017
    Configuration menu
    Copy the full SHA
    d55db72 View commit details
    Browse the repository at this point in the history

Commits on Jan 20, 2017

  1. Replace '.ext ==' pattern with is_of_type

    mvdbeek committed Jan 20, 2017
    Configuration menu
    Copy the full SHA
    f9a5168 View commit details
    Browse the repository at this point in the history