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Add "use_header_names" option to histogram #631

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merged 3 commits into from
Feb 7, 2025
Merged

Add "use_header_names" option to histogram #631

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6616f67
Add "use_header_names" option to histogram
hechth Jan 23, 2025
85da33b
fixed linting
hechth Feb 3, 2025
07b3f13
added select to choose column
hechth Feb 4, 2025
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1 change: 1 addition & 0 deletions tools/histogram/.shed.yml
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Expand Up @@ -7,4 +7,5 @@ long_description: |
name: histogram
owner: devteam
remote_repository_url: https://github.com/galaxyproject/tools-devteam/tree/master/tools/histogram
homepage_url: https://github.com/galaxyproject/tools-devteam/tree/master/tools/histogram
type: unrestricted
18 changes: 16 additions & 2 deletions tools/histogram/histogram2.xml
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@@ -1,4 +1,4 @@
<tool id="histogram_rpy" name="Histogram" version="1.0.4">
<tool id="histogram_rpy" name="Histogram" version="1.0.5">
<description>of a numeric column</description>
<requirements>
<requirement type="package" version="3.3.2">rpy2</requirement>
Expand All @@ -17,7 +17,18 @@ python '$__tool_directory__/histogram.py'
</command>
<inputs>
<param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/>
<param name="numerical_column" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
<conditional name="cols">
<param name="header" type="select" label="Does the table have a header?" refresh_on_change="true" help="If the table has a header, the column can be selected using the name instead of the index.">
<option value="yes">yes</option>
<option value="no">no</option>
</param>
<when value="yes">
<param name="numerical_column" type="data_column" data_ref="input" numerical="True" use_header_names="true" label="Numerical column for x axis" />
</when>
<when value="no">
<param name="numerical_column" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
</when>
</conditional>
<param name="breaks" type="integer" value="0" label="Number of breaks (bars)"/>
<param name="title" type="text" value="Histogram" label="Plot title"/>
<param name="xlab" type="text" value="V1" label="Label for x axis"/>
Expand Down Expand Up @@ -84,4 +95,7 @@ This tool computes a histogram of the numerical values in a column of a dataset.
.. image:: histogram2.png

</help>
<citations>
<citation type="doi">10.1145/3386334</citation>
</citations>
</tool>