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Pull requests: galaxyproject/tools-iuc

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343 Open 5,697 Closed
343 Open 5,697 Closed
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Pull requests list

Split metawrap tool
#7365 opened Oct 17, 2025 by bernt-matthias Loading…
3 of 5 tasks
Add memory flag to metaSPAdes for better RAM handeling
#7363 opened Oct 15, 2025 by SantaMcCloud Loading…
3 of 5 tasks
10
Fix cramino testdata
#7362 opened Oct 15, 2025 by lsterck Loading…
3 of 5 tasks
Updating tools/muon from version 0.1.6 to 0.1.7
#7351 opened Oct 9, 2025 by gxydevbot Loading…
Update Semibin 2.0.2 to 2.2.0
#7347 opened Oct 8, 2025 by SantaMcCloud Loading…
3 of 5 tasks
14
Add tabular output to tb-profiler collate
#7345 opened Oct 8, 2025 by buhlentozini Loading…
9
Updating tools/staramr from version 0.11.0 to 0.11.1
#7343 opened Oct 7, 2025 by gxydevbot Loading…
1
Update coreprofiler db
#7341 opened Oct 6, 2025 by hugolefeuvre Loading…
3 of 5 tasks
13
Fixing tools/ena_upload_cli - credential fetching fix
#7340 opened Oct 6, 2025 by bedroesb Loading…
2 of 5 tasks
8
Updating tools/trycycler from version 0.5.5 to 0.5.6
#7336 opened Oct 6, 2025 by gxydevbot Loading…
Updating tools/rp2paths from version 2.0.0 to 2.1.0
#7333 opened Oct 6, 2025 by gxydevbot Loading…
Updating tools/genomescope from version 2.0.1 to 2.1.0
#7332 opened Oct 6, 2025 by gxydevbot Loading…
1
JBrowse2 polishing
#7330 opened Oct 4, 2025 by abretaud Loading…
3 of 5 tasks
8
Adding a new tool: read2tree
#7318 opened Sep 30, 2025 by nromashchenko Loading…
3 of 5 tasks
20
Updating tools/beacon2 from version 2.0.0 to 2.0.5
#7311 opened Sep 29, 2025 by gxydevbot Loading…
Adds wrapper features for Multiqc to support mosdepth
#7309 opened Sep 26, 2025 by bwlang • Draft
3 of 5 tasks
3
New Addition: ripples and general update to latest version of usher
#7306 opened Sep 25, 2025 by lsterck Loading…
4 of 5 tasks
16
New tool addition: Samestr2
#7304 opened Sep 25, 2025 by xens25 • Draft
5 tasks
Add tool to detect circular sequences
#7296 opened Sep 22, 2025 by bebatut Loading…
3 of 5 tasks
12
add COMEBin utility script
#7285 opened Sep 18, 2025 by SantaMcCloud Loading…
3 of 5 tasks
32
Updating tools/fermikit from version r193 to r204
#7273 opened Sep 15, 2025 by gxydevbot Loading…
Add MaAsLin3
#7263 opened Sep 8, 2025 by SantaMcCloud Loading…
3 of 5 tasks
30
Update kraken2 and add support for custom databases
#7257 opened Sep 4, 2025 by pvanheus Loading…
3 of 5 tasks
16
Updating tools/trimmomatic from version 0.39 to 0.40
#7253 opened Sep 1, 2025 by gxydevbot Loading…
Updating tools/biom_format from version 2.1.15 to 2.1.17
#7250 opened Sep 1, 2025 by gxydevbot Loading…
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