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more memory and fewer cores for mirdeep2
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This has come up on Galaxy Australia because mem: 20 is not quite enough for mirdeep2_mapper and the default is not enough for mirdeep2. The wrappers make no reference to GALAXY_SLOTS so no need to set cores for these.
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cat-bro authored Oct 1, 2024
1 parent 5f8c248 commit b3bf345
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions tools.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2640,9 +2640,10 @@ tools:
toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/.*:
cores: 10
mem: 20
toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2/rbc_mirdeep2/.*:
mem: 8
toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/.*:
cores: 10
mem: 20
mem: 28
toolshed.g2.bx.psu.edu/repos/rnateam/paralyzer/paralyzer/.*:
mem: 8
env:
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