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Restore reverted "Add default resource params and slurm destination"" #63

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merged 1 commit into from
Sep 26, 2024
Merged

Restore reverted "Add default resource params and slurm destination"" #63

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19 changes: 19 additions & 0 deletions tools.yml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
global:
default_inherits: default
tools:
default:
gpus: 0
cores: 1
mem: cores * 3.8
env: {}
Expand Down Expand Up @@ -2558,3 +2561,19 @@ tools:
mem: 32
wig_to_bigWig:
mem: 10
destinations:
default:
params:
tpv_cores: '{cores}'
tpv_gpus: '{gpus}'
tpv_mem: '{mem}'
abstract: true
tpvdb_slurm:
context:
slurm_walltime: ''
slurm_partition: ''
slurm_account: ''
params:
native_specification: |
--nodes=1 --ntasks={cores} --mem={round(mem*1024)} {'--time='+ slurm_walltime if slurm_walltime else ''} {'--gres=gres:gpu:' + str(gpus) if gpus else ''} {'--partition=' + slurm_partition if slurm_partition else ''} {'--account=' + slurm_account if slurm_account else ''}
abstract: true
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