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Updated recetox tools which require docker containers #67

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Sep 2, 2024
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24 changes: 24 additions & 0 deletions tools.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2416,8 +2416,32 @@ tools:
mem: 12
env:
_JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
toolshed.g2.bx.psu.edu/repos/recetox/matchms_formatter/matchms_formatter/.*:
mem: 32
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_neutral_run/qcxms_neutral_run/.*:
mem: 32
scheduling:
require:
- docker
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_production_run/qcxms_production_run/.*:
mem: 8
scheduling:
require:
- docker
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/.*:
cores: 4
mem: 32
toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_align_features/recetox_aplcms_align_features/.*:
cores: 4
toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_generate_feature_table/recetox_aplcms_generate_feature_table/.*:
mem: 16
toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_recover_weaker_signals/recetox_aplcms_recover_weaker_signals/.*:
mem: 16
toolshed.g2.bx.psu.edu/repos/recetox/recetox_msfinder/recetox_msfinder/.*:
mem: 64
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scheduling:
require:
- docker
toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/.*:
mem: 64
toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/.*:
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