[rdjsonl] reported by reviewdog 🐶 Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link. Raw Output: {"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/sequence-analysis/tutorials/quality-control/tutorial.md","range":{"start":{"line":156,"column":38},"end":{"line":156,"column":44}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":156,"column":38},"end":{"line":156,"column":44}}}]}

[rdjsonl] reported by reviewdog 🐶 Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link. Raw Output: {"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/sequence-analysis/tutorials/quality-control/tutorial.md","range":{"start":{"line":320,"column":68},"end":{"line":320,"column":74}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":320,"column":68},"end":{"line":320,"column":74}}}]}

[rdjsonl] reported by reviewdog 🐶 Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link. Raw Output: {"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/sequence-analysis/tutorials/quality-control/tutorial.md","range":{"start":{"line":558,"column":172},"end":{"line":558,"column":178}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":558,"column":172},"end":{"line":558,"column":178}}}]}

[rdjsonl] reported by reviewdog 🐶 You have skipped a heading level, please correct this. <details><summary>Listing of Heading Levels</summary> ``` # Introduction # Inspect a raw sequence file # Assess quality with FASTQE 🧬😎 - short reads only # Assess quality with FastQC - short & long reads ## Per base sequence quality #### Adapter Content #### Per tile sequence quality ## Per sequence quality scores ## Per base sequence content ## Per sequence GC content #### Sequence length distribution ## Sequence Duplication Levels ## Over-represented sequences # Trim and filter - short reads # Processing multiple datasets ## Process paired-end data # Assess quality with Nanoplot - Long reads only ## Histogram of read lengths ## Read lengths vs Average read quality plot using dots # Assess quality with PycoQC - Nanopore only ## Basecalled reads length ### Basecalled reads PHRED quality ## Basecalled reads length vs reads PHRED quality ## Output over experiment time ### Read length over experiment time ## Channel activity over time # Conclusion ``` </details> Raw Output: {"message":"You have skipped a heading level, please correct this.\n<details><summary>Listing of Heading Levels</summary>\n\n```\n# Introduction\n# Inspect a raw sequence file\n# Assess quality with FASTQE 🧬😎 - short reads only\n# Assess quality with FastQC - short & long reads\n## Per base sequence quality\n#### Adapter Content\n#### Per tile sequence quality\n## Per sequence quality scores\n## Per base sequence content\n## Per sequence GC content\n#### Sequence length distribution\n## Sequence Duplication Levels\n## Over-represented sequences\n# Trim and filter - short reads\n# Processing multiple datasets\n## Process paired-end data\n# Assess quality with Nanoplot - Long reads only\n## Histogram of read lengths\n## Read lengths vs Average read quality plot using dots\n# Assess quality with PycoQC - Nanopore only\n## Basecalled reads length\n### Basecalled reads PHRED quality\n## Basecalled reads length vs reads PHRED quality\n## Output over experiment time\n### Read length over experiment time\n## Channel activity over time\n# Conclusion\n```\n</details>","location":{"path":"./topics/sequence-analysis/tutorials/quality-control/tutorial.md","range":{"start":{"line":298,"column":1},"end":{"line":298,"column":5}}},"severity":"ERROR","code":{"value":"GTN:028","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn028"},"suggestions":[{"text":"###","range":{"start":{"line":298,"column":1},"end":{"line":298,"column":5}}}]}

[rdjsonl] reported by reviewdog 🐶 You have skipped a heading level, please correct this. <details><summary>Listing of Heading Levels</summary> ``` # Introduction # Inspect a raw sequence file # Assess quality with FASTQE 🧬😎 - short reads only # Assess quality with FastQC - short & long reads ## Per base sequence quality #### Adapter Content #### Per tile sequence quality ## Per sequence quality scores ## Per base sequence content ## Per sequence GC content #### Sequence length distribution ## Sequence Duplication Levels ## Over-represented sequences # Trim and filter - short reads # Processing multiple datasets ## Process paired-end data # Assess quality with Nanoplot - Long reads only ## Histogram of read lengths ## Read lengths vs Average read quality plot using dots # Assess quality with PycoQC - Nanopore only ## Basecalled reads length ### Basecalled reads PHRED quality ## Basecalled reads length vs reads PHRED quality ## Output over experiment time ### Read length over experiment time ## Channel activity over time # Conclusion ``` </details> Raw Output: {"message":"You have skipped a heading level, please correct this.\n<details><summary>Listing of Heading Levels</summary>\n\n```\n# Introduction\n# Inspect a raw sequence file\n# Assess quality with FASTQE 🧬😎 - short reads only\n# Assess quality with FastQC - short & long reads\n## Per base sequence quality\n#### Adapter Content\n#### Per tile sequence quality\n## Per sequence quality scores\n## Per base sequence content\n## Per sequence GC content\n#### Sequence length distribution\n## Sequence Duplication Levels\n## Over-represented sequences\n# Trim and filter - short reads\n# Processing multiple datasets\n## Process paired-end data\n# Assess quality with Nanoplot - Long reads only\n## Histogram of read lengths\n## Read lengths vs Average read quality plot using dots\n# Assess quality with PycoQC - Nanopore only\n## Basecalled reads length\n### Basecalled reads PHRED quality\n## Basecalled reads length vs reads PHRED quality\n## Output over experiment time\n### Read length over experiment time\n## Channel activity over time\n# Conclusion\n```\n</details>","location":{"path":"./topics/sequence-analysis/tutorials/quality-control/tutorial.md","range":{"start":{"line":401,"column":1},"end":{"line":401,"column":5}}},"severity":"ERROR","code":{"value":"GTN:028","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn028"},"suggestions":[{"text":"###","range":{"start":{"line":401,"column":1},"end":{"line":401,"column":5}}}]}

[rdjsonl] reported by reviewdog 🐶 This tool identifier looks incorrect, it doesn't have the right number of segments. Raw Output: {"message":"This tool identifier looks incorrect, it doesn't have the right number of segments.","location":{"path":"./topics/sequence-analysis/tutorials/sars-with-galaxy-on-anvil/tutorial.md","range":{"start":{"line":233,"column":28},"end":{"line":233,"column":71}}},"severity":"ERROR","code":{"value":"GTN:009","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn009"}}