New CiteSeq Tool Tutorial--DRAFT-WIP #856
Workflow file for this run
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| name: "[CI] GIT-GAT" | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| paths: | |
| - 'topics/admin/**' | |
| - 'bin/knit*' | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'topics/admin/**' | |
| - 'bin/knit*' | |
| jobs: | |
| run: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 1 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.7' | |
| architecture: 'x64' | |
| - name: Export commits | |
| run: | | |
| bin/knit-automated.sh export; | |
| - name: Install SSH key | |
| uses: shimataro/ssh-key-action@v2 | |
| with: | |
| key: ${{ secrets.GIT_GAT_SSH_KEY }} | |
| known_hosts: "github.com ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEAq2A7hRGmdnm9tUDbO9IDSwBK6TbQa+PXYPCPy6rbTrTtw7PHkccKrpp0yVhp5HdEIcKr6pLlVDBfOLX9QUsyCOV0wzfjIJNlGEYsdlLJizHhbn2mUjvSAHQqZETYP81eFzLQNnPHt4EVVUh7VfDESU84KezmD5QlWpXLmvU31/yMf+Se8xhHTvKSCZIFImWwoG6mbUoWf9nzpIoaSjB+weqqUUmpaaasXVal72J+UX2B+2RPW3RcT0eOzQgqlJL3RKrTJvdsjE3JEAvGq3lGHSZXy28G3skua2SmVi/w4yCE6gbODqnTWlg7+wC604ydGXA8VJiS5ap43JXiUFFAaQ==" | |
| if_key_exists: ignore # replace / ignore / fail; optional (defaults to fail) | |
| if: github.event.pull_request.head.repo.full_name == 'galaxyproject/training-material' && github.event.pull_request.base.repo.full_name == 'galaxyproject/training-material' | |
| - name: Setup the repo | |
| run: | | |
| cd /tmp/git-gat/ | |
| git config --global init.defaultBranch main | |
| git init | |
| git config user.email "[email protected]" | |
| git config user.name "The Galaxy Training Network" | |
| - name: Setup the origin (fork) | |
| run: | | |
| cd /tmp/git-gat/ | |
| git remote add origin https://github.com/hexylena/git-gat | |
| if: github.event.pull_request.head.repo.full_name != 'galaxyproject/training-material' || github.event.pull_request.base.repo.full_name != 'galaxyproject/training-material' | |
| - name: Setup the origin (branch) | |
| run: | | |
| cd /tmp/git-gat/ | |
| git remote add origin [email protected]:hexylena/git-gat | |
| if: github.event.pull_request.head.repo.full_name == 'galaxyproject/training-material' && github.event.pull_request.base.repo.full_name == 'galaxyproject/training-material' | |
| - name: Add scripts directory | |
| run: | | |
| cd /tmp/git-gat/ | |
| git fetch origin --tags | |
| git add .scripts/ | |
| git commit -m "admin/init/0000: Add scripts directory" | |
| git am 0-commit-0000-root-commit.patch | |
| ls -al | |
| - name: Commit the rounds of patches | |
| run: | | |
| cd /tmp/git-gat/ | |
| for i in {10..50}; do | |
| # Commit those patches | |
| patches=$(ls $i-*.patch 2>/dev/null| wc -c) | |
| if (( patches > 0 )); then | |
| git am -3 -C2 $i-*.patch; | |
| # And tag it | |
| git tag -f "step-$(( i - 9 ))"; | |
| fi | |
| done | |
| rm -f *.patch | |
| ls -al | |
| - name: Push the results | |
| run: | | |
| cd /tmp/git-gat/ | |
| # Push the results | |
| git push -f -u origin main | |
| today=$(date -I) | |
| git checkout -b $today | |
| git push -f --set-upstream origin $today | |
| git push -f --tags | |
| if: github.event.pull_request.head.repo.full_name == 'galaxyproject/training-material' && github.event.pull_request.base.repo.full_name == 'galaxyproject/training-material' | |
| # TODO: figure out the logic aroudn checking branch name. | |
| # && github.ref == 'refs/heads/main' |