Add a tutorial for MetaShRIMPS #2883
Annotations
5 errors and 2 warnings
Check Tutorial Formatting:
topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md#L52
[] reported by reviewdog 🐶
Potential broken box. A comment was opened on 48, but not closed on line 52
Raw Output:
topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md:52: Potential broken box. A comment was opened on 48, but not closed on line 52
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Check Tutorial Formatting:
topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md#L95
[] reported by reviewdog 🐶
Potential broken box. A hands_on was opened on 85, but not closed on line 95
Raw Output:
topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md:95: Potential broken box. A hands_on was opened on 85, but not closed on line 95
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Check Tutorial Formatting:
topics/ecology/tutorials/Metashrimps_tutorial/workflows/main_workflow.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).
Raw Output:
{"message":"This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).","location":{"path":"./topics/ecology/tutorials/Metashrimps_tutorial/workflows/main_workflow.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:027","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn027"}}
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Check Tutorial Formatting:
topics/ecology/tutorials/Metashrimps_tutorial/workflows/main_workflow.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow has a creator but is missing an identifier for them. Please ensure all creators have valid ORCIDs.
Raw Output:
{"message":"This workflow has a creator but is missing an identifier for them. Please ensure all creators have valid ORCIDs.","location":{"path":"./topics/ecology/tutorials/Metashrimps_tutorial/workflows/main_workflow.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:025","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn025"}}
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Check Tutorial Formatting
Process completed with exit code 1.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Check Tutorial Formatting:
topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md#L54
[rdjsonl] reported by reviewdog 🐶
This looks like a DOI which could be better served by using the built-in Citations mechanism. You can use https://doi2bib.org to convert your DOI into a .bib formatted entry, and add to your tutorial.md
Raw Output:
{"message":"This looks like a DOI which could be better served by using the built-in Citations mechanism. You can use https://doi2bib.org to convert your DOI into a .bib formatted entry, and add to your tutorial.md","location":{"path":"./topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md","range":{"start":{"line":54,"column":24},"end":{"line":54,"column":93}}},"severity":"WARNING","code":{"value":"GTN:004","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn004"},"suggestions":[{"text":"{% cite ... %}","range":{"start":{"line":54,"column":24},"end":{"line":54,"column":93}}}]}
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