Merge pull request #5319 from galaxyproject/chocolate-marlin

Fix bad link in circos, other minor
galaxyproject · Sep 17, 2024 · 3825187 · 3825187
2 parents 0bf34ca + 880c607
commit 3825187
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Showing 6 changed files with 9 additions and 4 deletions.
diff --git a/_plugins/jekyll-jsonld.rb b/_plugins/jekyll-jsonld.rb
@@ -814,16 +814,16 @@ def generate_material_jsonld(material, topic, site)
         # Description with questions, objectives and keypoints
         if material.key?('questions') && !material['questions'].nil? && material['questions'].length.positive?
           questions = material['questions'].join("\n - ")
-          description.push("The questions this #{material['type']} addresses are:\n - #{questions}\n\n")
+          description.push("## Questions this #{material['type']} will address\n\n - #{questions}\n\n")
         end
         if material.key?('objectives') && !material['objectives'].nil? && material['objectives'].length.positive?
           objectives = material['objectives'].join("\n - ")
-          description.push("The objectives are:\n - #{objectives}\n\n")
+          description.push("## Learning Objectives\n\n - #{objectives}\n\n")
           data['teaches'] = objectives
         end
         if material.key?('keypoints') && !material['keypoints'].nil? && material['keypoints'].length.positive?
           keypoints = material['keypoints'].join("\n - ")
-          description.push("The keypoints are:\n - #{keypoints}\n\n")
+          description.push("## Key Points\n\n - #{keypoints}\n\n")
         end
 
         # Keywords

diff --git a/topics/teaching/tutorials/galaxy-admin-training/tutorial.md b/topics/teaching/tutorials/galaxy-admin-training/tutorial.md
@@ -17,6 +17,7 @@ key_points:
   - Infrastructure is available for running GATs for free from UseGalaxy.eu
   - This can be very convenient and easy to use
   - EU provides appropriate DNS entries so you can run trainings with ITs.
+level: Advanced
 requirements:
   - type: "internal"
     topic_name: admin

diff --git a/topics/variant-analysis/tutorials/trio-analysis/tutorial.md b/topics/variant-analysis/tutorials/trio-analysis/tutorial.md
@@ -23,6 +23,7 @@ contributors:
 - wm75
 - hexylena
 - shiltemann
+level: Advanced
 tags:
 - cyoa
 

diff --git a/topics/visualisation/tutorials/circos-microbial/tutorial.md b/topics/visualisation/tutorials/circos-microbial/tutorial.md
@@ -12,6 +12,7 @@ time_estimation: 30m
 key_points:
   - Circos is incredibly customisable
   - Not all customisations have to be done with rules, but they can be a useful method
+level: Intermediate
 
 requirements:
   - type: "internal"
@@ -85,7 +86,7 @@ If you would like to try the 'fast' option, once you've imported the datasets, y
 >
 > 1. **Import the workflow** into Galaxy
 >
->    {% snippet faqs/galaxy/workflows_run_trs.md path="topics/microbiome/tutorials/mothur-miseq-sop-short/workflows/workflow1_quality_control.ga" title="Quality Control" %}
+>    {% snippet faqs/galaxy/workflows_run_trs.md path="topics/visualisation/tutorials/circos-microbial/workflows/main_workflow.ga" title="Circos for E. Coli" %}
 >
 > 2. Run the workflow {% icon workflow %} using the following parameters:
 >

diff --git a/topics/visualisation/tutorials/circos/tutorial.md b/topics/visualisation/tutorials/circos/tutorial.md
@@ -17,6 +17,7 @@ contributors:
   - shiltemann
   - hexylena
   - gallardoalba
+level: Intermediate
 
 recordings:
 - captioners:

diff --git a/topics/visualisation/tutorials/jbrowse/tutorial.md b/topics/visualisation/tutorials/jbrowse/tutorial.md
@@ -14,6 +14,7 @@ key_points:
 - This tutorial can not exhaustively cover every data type, but maybe it provides inspiration for your own analyses
 - JBrowse is a great, workflow-compatible alternative to other genome browsers
 - You can build visualisations that summarise dozens of analyses in one visualisation
+level: Intermediate
 tags:
   - gmod
   - jbrowse1