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Merge pull request #5456 from AnnaSyme/patch-14
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Update Helixer tutorial.md - gffread inputs
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bgruening authored Oct 16, 2024
2 parents f9a9393 + 97b8913 commit 55607e9
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2 changes: 1 addition & 1 deletion topics/genome-annotation/tutorials/helixer/tutorial.md
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Expand Up @@ -170,7 +170,7 @@ We want to run BUSCO on the protein sequences predicted from gene sequences of t
> - {% icon param-file %} *"Input GFF3 or GTF feature file"*: output of {% tool [Helixer](toolshed.g2.bx.psu.edu/repos/genouest/helixer/helixer/0.3.3+galaxy1)) %}
> - In *"Reference Genome"* select: `From your history` (Input dataset)
> - *"Genome Reference Fasta"*: `masked genome` (Input dataset)
> - In *"Select fasta outputs"* select: `fasta file with spliced exons for each GFF transcript (-y)`
> - In *"Select fasta outputs"* select: `protein fasta file with the translation of CDS for each record (-y)`
> - *"full GFF attribute preservation (all attributes are shown)"*: `Yes`
> - *"decode url encoded characters within attributes"*: `Yes`
> - *"warn about duplicate transcript IDs and other potential problems with the given GFF/GTF records"*: `Yes`
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