Skip to content

Commit

Permalink
deploy: 7daef0c
Browse files Browse the repository at this point in the history
  • Loading branch information
@bgruening
bgruening committed Jul 19, 2023
1 parent 80aa67b commit 60cea61
Show file tree
Hide file tree
Showing 2,845 changed files with 52,136 additions and 51,231 deletions.
12 changes: 6 additions & 6 deletions 404.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
<script type="text/javascript">
Sentry.init({
dsn: "https://[email protected]/10",
release: "galaxy-training-network@b1277bcc5233898cf1be9a3931cf54198b4c672e",
release: "galaxy-training-network@7daef0ce47eded38928b15c81507fe59f6e5bce9",
integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
sampleRate: 0.1,
tracesSampleRate: 0.1,
Expand All @@ -41,8 +41,8 @@
<link rel="preload" href="/training-material/assets/fonts/AtkinsonHyperlegible/Atkinson-Hyperlegible-Italic-102a.woff2" as="font" type="font/woff2" crossorigin>
<link rel="preload" href="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML" as="script" crossorigin>
<link rel="preload" href="/training-material/assets/css/main.css?v=3" as="style">
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1689639094' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1689639094' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1689724671' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1689724671' as='script'>
<link rel="stylesheet" href="/training-material/assets/css/main.css?v=3">
<link rel="manifest" href="/training-material/manifest.json">
<meta name="theme-color" content="#2c3143"/>
Expand All @@ -68,7 +68,7 @@

</head>
<body data-spy="scroll" data-target="#toc">
<script src='/training-material/assets/js/bundle.theme.js?v=1689639094'></script>
<script src='/training-material/assets/js/bundle.theme.js?v=1689724671'></script>
<header>
<nav class="navbar navbar-expand-md navbar-dark" aria-label="Site Navigation">
<div class="container">
Expand Down Expand Up @@ -233,7 +233,7 @@ <h2 id="we-cant-seem-to-find-the-page-youre-looking-for">We can’t seem to find
The GTN infrastructure is licensed under <a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a>
</p>
<p>
Revision <a href="https://github.com/galaxyproject/training-material/commit/b1277bcc5233898cf1be9a3931cf54198b4c672e">b1277bc</a>, built with Jekyll (4.3.2 | production)
Revision <a href="https://github.com/galaxyproject/training-material/commit/7daef0ce47eded38928b15c81507fe59f6e5bce9">7daef0c</a>, built with Jekyll (4.3.2 | production)
</p>
</div>
<div class="col-sm-6" style="text-align: right">
Expand Down Expand Up @@ -261,7 +261,7 @@ <h2 id="we-cant-seem-to-find-the-page-youre-looking-for">We can’t seem to find
</footer>


<script src='/training-material/assets/js/bundle.main.js?v=1689639094'></script>
<script src='/training-material/assets/js/bundle.main.js?v=1689724671'></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
</body>
</html>
12 changes: 6 additions & 6 deletions accessibility.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
<script type="text/javascript">
Sentry.init({
dsn: "https://[email protected]/10",
release: "galaxy-training-network@b1277bcc5233898cf1be9a3931cf54198b4c672e",
release: "galaxy-training-network@7daef0ce47eded38928b15c81507fe59f6e5bce9",
integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
sampleRate: 0.1,
tracesSampleRate: 0.1,
Expand All @@ -41,8 +41,8 @@
<link rel="preload" href="/training-material/assets/fonts/AtkinsonHyperlegible/Atkinson-Hyperlegible-Italic-102a.woff2" as="font" type="font/woff2" crossorigin>
<link rel="preload" href="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML" as="script" crossorigin>
<link rel="preload" href="/training-material/assets/css/main.css?v=3" as="style">
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1689639094' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1689639094' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1689724671' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1689724671' as='script'>
<link rel="stylesheet" href="/training-material/assets/css/main.css?v=3">
<link rel="manifest" href="/training-material/manifest.json">
<meta name="theme-color" content="#2c3143"/>
Expand All @@ -68,7 +68,7 @@

</head>
<body data-spy="scroll" data-target="#toc">
<script src='/training-material/assets/js/bundle.theme.js?v=1689639094'></script>
<script src='/training-material/assets/js/bundle.theme.js?v=1689724671'></script>
<header>
<nav class="navbar navbar-expand-md navbar-dark" aria-label="Site Navigation">
<div class="container">
Expand Down Expand Up @@ -283,7 +283,7 @@ <h3 id="additional-features">Additional Features</h3>
The GTN infrastructure is licensed under <a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a>
</p>
<p>
Revision <a href="https://github.com/galaxyproject/training-material/commit/b1277bcc5233898cf1be9a3931cf54198b4c672e">b1277bc</a>, built with Jekyll (4.3.2 | production)
Revision <a href="https://github.com/galaxyproject/training-material/commit/7daef0ce47eded38928b15c81507fe59f6e5bce9">7daef0c</a>, built with Jekyll (4.3.2 | production)
</p>
</div>
<div class="col-sm-6" style="text-align: right">
Expand Down Expand Up @@ -311,7 +311,7 @@ <h3 id="additional-features">Additional Features</h3>
</footer>


<script src='/training-material/assets/js/bundle.main.js?v=1689639094'></script>
<script src='/training-material/assets/js/bundle.main.js?v=1689724671'></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
</body>
</html>
12 changes: 6 additions & 6 deletions all-faq.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
<script type="text/javascript">
Sentry.init({
dsn: "https://[email protected]/10",
release: "galaxy-training-network@b1277bcc5233898cf1be9a3931cf54198b4c672e",
release: "galaxy-training-network@7daef0ce47eded38928b15c81507fe59f6e5bce9",
integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
sampleRate: 0.1,
tracesSampleRate: 0.1,
Expand All @@ -41,8 +41,8 @@
<link rel="preload" href="/training-material/assets/fonts/AtkinsonHyperlegible/Atkinson-Hyperlegible-Italic-102a.woff2" as="font" type="font/woff2" crossorigin>
<link rel="preload" href="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML" as="script" crossorigin>
<link rel="preload" href="/training-material/assets/css/main.css?v=3" as="style">
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1689639094' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1689639094' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1689724671' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1689724671' as='script'>
<link rel="stylesheet" href="/training-material/assets/css/main.css?v=3">
<link rel="manifest" href="/training-material/manifest.json">
<meta name="theme-color" content="#2c3143"/>
Expand All @@ -68,7 +68,7 @@

</head>
<body data-spy="scroll" data-target="#toc">
<script src='/training-material/assets/js/bundle.theme.js?v=1689639094'></script>
<script src='/training-material/assets/js/bundle.theme.js?v=1689724671'></script>
<header>
<nav class="navbar navbar-expand-md navbar-dark" aria-label="Site Navigation">
<div class="container">
Expand Down Expand Up @@ -3430,7 +3430,7 @@ <h5>Still have questions?</h5>
The GTN infrastructure is licensed under <a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a>
</p>
<p>
Revision <a href="https://github.com/galaxyproject/training-material/commit/b1277bcc5233898cf1be9a3931cf54198b4c672e">b1277bc</a>, built with Jekyll (4.3.2 | production)
Revision <a href="https://github.com/galaxyproject/training-material/commit/7daef0ce47eded38928b15c81507fe59f6e5bce9">7daef0c</a>, built with Jekyll (4.3.2 | production)
</p>
</div>
<div class="col-sm-6" style="text-align: right">
Expand Down Expand Up @@ -3458,7 +3458,7 @@ <h5>Still have questions?</h5>
</footer>


<script src='/training-material/assets/js/bundle.main.js?v=1689639094'></script>
<script src='/training-material/assets/js/bundle.main.js?v=1689724671'></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
</body>
</html>
10 changes: 5 additions & 5 deletions api/configuration.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -133,7 +133,7 @@
"resources": [
"assets/js/theme.js"
],
"timestamp": 1689639094
"timestamp": 1689724671
},
"main": {
"preload": true,
Expand All @@ -146,7 +146,7 @@
"assets/js/list.min.js",
"assets/js/main.js"
],
"timestamp": 1689639094
"timestamp": 1689724671
}
},
"figurify": {
Expand Down Expand Up @@ -288,8 +288,8 @@
"serving": false,
"boxify": {
},
"git_revision": "b1277bcc5233898cf1be9a3931cf54198b4c672e",
"git_revision_short": "b1277bc",
"git_revision": "7daef0ce47eded38928b15c81507fe59f6e5bce9",
"git_revision_short": "7daef0c",
"gtn_fork": "galaxyproject",
"git_tags": [
"2019-02-07",
Expand Down Expand Up @@ -352,5 +352,5 @@
"2023-07-01",
"2023-06-01"
],
"age": 8.05201916495551
"age": 8.054757015742641
}
3 changes: 3 additions & 0 deletions api/feedback.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2325,3 +2325,6 @@
2323,5,I learned a lot about a subject new to me. I appreciated that why and how each tool contributed was explained.,"It would be great if the example Galaxy workflow carried over more of the explanatory information; met the best practices, etc..",,Peptide and Protein ID using OpenMS tools,Proteomics,2023-07,2023-07-14
2324,3,It was detailed,"I've used galaxy a few times, and this is the first time I'm seeing the collections feature. Somewhere in the tutorial, I think after BWA-MEM, the next tool didn't automatically pick an input file as usual, and even when I clicked the drop down, there was no list of the files in my history. Might probably make more sense with a screenshot, but anyway. Now, I feel like the rest of the analysis from that point was on just one of the datasets and not the collection. There's also the fact that some outputs are automatically hidden. I enjoy tinkering around knowing fully well that i won't break anything, so I don't really mind. But a complete newbie would probably get frustrated not knowing where history 16,17,18,19... disappeared to. Since this tutorial is in the introductory section, it might be helpful to acknowledge those peculiarities. Finally, maybe tell us how to visualise the vcf too? What to look for, how to know what's interesting,... I'm still looking for the nonesense mutation, but I'm sure I'll find it. Thanks to the creators still. I loved the intro part; it set the flow for the rest of the tutorial.",,NGS data logistics,Introduction to Galaxy Analyses,2023-07,2023-07-15
2325,5,The accurate step by step explanations,"Look at all your histories I think it would be benefical to mention that you have to create a new history before you can see them side by side. Also i was not able to get my window to look like the one in the tutorial. Couldn't really get the ""proper"" side by side view. ",,A short introduction to Galaxy,Introduction to Galaxy Analyses,2023-07,2023-07-17
2326,5,Very user friendly,,,Galaxy 101 for everyone,Introduction to Galaxy Analyses,2023-07,2023-07-18
2327,5,The clarity of the explanation and the easy-to-use slack tutorial,,,Galaxy 101 for everyone,Introduction to Galaxy Analyses,2023-07,2023-07-18
2328,5,"Using Galaxy is not trivial without initial training, but the initial training is simple enough to get everything you need to follow. I have found no other way to acquire bioinformatics expertise in such a wide diversity of tools and analyses in a unified and practical way, just by clicking, and with easy access to any amount of data. ",Can't say yet.,,Basics of machine learning,Statistics and machine learning,2023-07,2023-07-18
33 changes: 33 additions & 0 deletions api/feedback.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -25584,5 +25584,38 @@
"topic": "Introduction to Galaxy Analyses",
"month": "2023-07",
"date": "2023-07-17"
},
{
"": "2326",
"note": "5",
"pro": "Very user friendly",
"con": null,
"anonymous": null,
"tutorial": "Galaxy 101 for everyone",
"topic": "Introduction to Galaxy Analyses",
"month": "2023-07",
"date": "2023-07-18"
},
{
"": "2327",
"note": "5",
"pro": "The clarity of the explanation and the easy-to-use slack tutorial",
"con": null,
"anonymous": null,
"tutorial": "Galaxy 101 for everyone",
"topic": "Introduction to Galaxy Analyses",
"month": "2023-07",
"date": "2023-07-18"
},
{
"": "2328",
"note": "5",
"pro": "Using Galaxy is not trivial without initial training, but the initial training is simple enough to get everything you need to follow. I have found no other way to acquire bioinformatics expertise in such a wide diversity of tools and analyses in a unified and practical way, just by clicking, and with easy access to any amount of data. ",
"con": "Can't say yet.",
"anonymous": null,
"tutorial": "Basics of machine learning",
"topic": "Statistics and machine learning",
"month": "2023-07",
"date": "2023-07-18"
}
]
2 changes: 1 addition & 1 deletion ...h/trs/v2/tools/metabolomics-gc_ms_with_xcms/versions/main_workflow/GALAXY/descriptor.json
View file

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion api/psl.json
View file

Large diffs are not rendered by default.

24 changes: 12 additions & 12 deletions api/top-tools.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -16434,10 +16434,6 @@
[
"toolshed.g2.bx.psu.edu/repos/recetox/riassigner/riassigner/0.3.4+galaxy1",
"0.3.4+galaxy1"
],
[
"toolshed.g2.bx.psu.edu/repos/recetox/riassigner/riassigner/0.3.2+galaxy1",
"0.3.2+galaxy1"
]
],
"tutorials": [
Expand Down Expand Up @@ -16467,6 +16463,10 @@
},
"recetox/ramclustr": {
"tool_id": [
[
"toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy0",
"1.3.0+galaxy0"
],
[
"toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy2",
"1.2.4+galaxy2"
Expand All @@ -16481,11 +16481,11 @@
]
]
},
"recetox/matchms_formatter": {
"recetox/matchms_similarity": {
"tool_id": [
[
"toolshed.g2.bx.psu.edu/repos/recetox/matchms_formatter/matchms_formatter/0.1.4",
"0.1.4"
"toolshed.g2.bx.psu.edu/repos/recetox/matchms_similarity/matchms_similarity/0.20.0+galaxy0",
"0.20.0+galaxy0"
]
],
"tutorials": [
Expand All @@ -16497,11 +16497,11 @@
]
]
},
"recetox/matchms_filtering": {
"recetox/matchms_formatter": {
"tool_id": [
[
"toolshed.g2.bx.psu.edu/repos/recetox/matchms_filtering/matchms_filtering/0.17.0+galaxy0",
"0.17.0+galaxy0"
"toolshed.g2.bx.psu.edu/repos/recetox/matchms_formatter/matchms_formatter/0.20.0+galaxy0",
"0.20.0+galaxy0"
]
],
"tutorials": [
Expand All @@ -16513,10 +16513,10 @@
]
]
},
"recetox/matchms": {
"recetox/matchms_filtering": {
"tool_id": [
[
"toolshed.g2.bx.psu.edu/repos/recetox/matchms/matchms/0.17.0+galaxy0",
"toolshed.g2.bx.psu.edu/repos/recetox/matchms_filtering/matchms_filtering/0.17.0+galaxy0",
"0.17.0+galaxy0"
]
],
Expand Down
Loading

0 comments on commit 60cea61

Please sign in to comment.