Merge pull request #5228 from Marie59/rocrate

Update of ro-crate export

topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md

@@ -20,6 +20,8 @@ priority: 2
 contributions:
   authorship:
     - pauldg
+  editing: 
+    - Marie59
   funding:
     - by-covid
     - eurosciencegateway
@@ -81,25 +83,13 @@ Let’s run the workflow and export the RO-Crate.
 >    https://zenodo.org/record/1319069/files/iris.csv
 >    ```
 >
->    Tip: Importing via links:
->
->    - Copy the link location
->    - Open the Galaxy Upload Manager (galaxy-upload on the top-right of the tool panel)
->    - Select Paste/Fetch Data
->    - Paste the link(s) into the text field
->    - Press Start
->    - Close the window
+>    {% snippet faqs/galaxy/datasets_import_via_link.md %}
 >
 > 2. Run **GTN Training: Galaxy 101 For Everyone** workflow using the following parameters:
 >    - *"Send results to a new history"*: `No`
 >    - *"1: Iris Dataset""*: the `iris.csv` file we just uploaded
 >
->    Tip: Running a workflow:
->    - Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
->    - Click on the workflow-run (Run workflow) button next to your workflow
->    - Configure the workflow as needed
->    - Click the Run Workflow button at the top-right of the screen
->    - You may have to refresh your history to see the queued jobs
+>    {% snippet faqs/galaxy/workflows_run.md  %}
 >
 > 3. **View the workflow outputs** once the workflow has completed
 >    - The workflow produces several text and tabular outputs, and two plot (image) outputs
@@ -108,11 +98,13 @@ Let’s run the workflow and export the RO-Crate.
 
 ## Export the Workflow Run Crate
 
-After the workflow has completed, we can export the RO-Crate. The crate does not appear in your history, but can be accessed from the **User -> Workflow Invocations** menu on the top bar.
+After the workflow has completed, we can export the RO-Crate. The crate does not appear in your history, but can be accessed from the {% icon galaxy-history-options %} **-> Show Invocations** menu on the top right of your history OR on the left pannel from the {% icon galaxy-panelview %} Workflow Invocations .
 
 > <hands-on-title>Export the Workflow Run Crate</hands-on-title>
 >
-> 1. In the top menu bar, go to **User -> Workflow Invocations**
+> 1. In the top right of your history, go to {% icon galaxy-history-options %} **-> Show Invocations**
+>
+>    ![screenshot of the history options to get the Show invocations button](./images/show_invocation.png)
 >
 > 2. Our latest workflow run should be listed at the top.
 >    - Click on it to expand it:
@@ -121,11 +113,12 @@ After the workflow has completed, we can export the RO-Crate. The crate does not
 >
 > 3. Click on the **Export** tab in the expanded view of the workflow invocation.
 >
-> 4. You should see a page like this. It contains:
->    - The different export options
->    - Location where the export should be sent to (Download locally or a remote location)
->
-> 5. Click on the Download option
+> 4. Click on the Export tab in the expanded view of the workflow invocation.
+>        You should see a page that contains three download options:
+> 	     - Research Object Crate (RO-Crate) 
+> 	     - BioCompute Object
+> 	     - File
+> 5. Click on the **Generate** {% icon galaxy-download %} option of the RO-Crate box (1st box)
 >
 >    ![screenshot of the beginning of the workflow run export options](./images/workflow-invocation-export.png)
 >