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Merge pull request #5011 from EngyNasr/pathogenTrainingJune2024Update
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Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition - Training update to latest workflows update
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@bebatut
bebatut authored Jun 7, 2024
2 parents 108b95d + cdd9337 commit 7767347
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2 changes: 1 addition & 1 deletion ...icrobiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.md
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Expand Up @@ -825,7 +825,7 @@ To identifly VFs, we use again **ABRicate** but this time with the [__VFDB__](ht
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100 changes: 71 additions & 29 deletions ...en-detection-from-nanopore-foodborne-data/workflows/gene_based_pathogen_identification.ga
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42 changes: 35 additions & 7 deletions ...n-from-nanopore-foodborne-data/workflows/nanopore_allele_based_pathogen_identification.ga
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