deploy: bb20967

404.html

@@ -18,7 +18,7 @@
 	console.log("Sentry: opt-in");
 	Sentry.init({
 		dsn: "https://[email protected]/10",
-		release: "galaxy-training-network@b7a7e0aae9e92bbfeb85ca299f0c54ded3cb073c",
+		release: "galaxy-training-network@bb2096720a599c30a32dd1c3a75a9542bc5f7cd0",
 		integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
 		sampleRate: 0.1,
 		tracesSampleRate: 0.1,
@@ -270,7 +270,7 @@ <h2 id="oops-we-cant-seem-to-find-the-page-youre-looking-for">Oops! We can’t s
 				</ul>
 				<span style="font-size: 1.3em">Framework</span>
 				<ul class="no-bullets">
-					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/b7a7e0aae9e92bbfeb85ca299f0c54ded3cb073c">b7a7e0a</a></li>
+					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/bb2096720a599c30a32dd1c3a75a9542bc5f7cd0">bb20967</a></li>
 					<li><a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a> Licensed</li>
 					<li><a href="https://jekyllrb.com/">Jekyll(4.3.2 | production)</a></li>
 				</ul>

accessibility.html

@@ -18,7 +18,7 @@
 	console.log("Sentry: opt-in");
 	Sentry.init({
 		dsn: "https://[email protected]/10",
-		release: "galaxy-training-network@b7a7e0aae9e92bbfeb85ca299f0c54ded3cb073c",
+		release: "galaxy-training-network@bb2096720a599c30a32dd1c3a75a9542bc5f7cd0",
 		integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
 		sampleRate: 0.1,
 		tracesSampleRate: 0.1,
@@ -321,7 +321,7 @@ <h3 id="additional-features">Additional Features</h3>
 				</ul>
 				<span style="font-size: 1.3em">Framework</span>
 				<ul class="no-bullets">
-					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/b7a7e0aae9e92bbfeb85ca299f0c54ded3cb073c">b7a7e0a</a></li>
+					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/bb2096720a599c30a32dd1c3a75a9542bc5f7cd0">bb20967</a></li>
 					<li><a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a> Licensed</li>
 					<li><a href="https://jekyllrb.com/">Jekyll(4.3.2 | production)</a></li>
 				</ul>

all-faq.html

@@ -18,7 +18,7 @@
 	console.log("Sentry: opt-in");
 	Sentry.init({
 		dsn: "https://[email protected]/10",
-		release: "galaxy-training-network@b7a7e0aae9e92bbfeb85ca299f0c54ded3cb073c",
+		release: "galaxy-training-network@bb2096720a599c30a32dd1c3a75a9542bc5f7cd0",
 		integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
 		sampleRate: 0.1,
 		tracesSampleRate: 0.1,
@@ -1099,7 +1099,7 @@ <h4 class="faq-area"> How can I reduce quota usage while still retaining prior w
 
 <h4 class="faq-area"> How do I create an account on a public Galaxy instance? <a href="/training-material/faqs/galaxy/account_create.html"><i class="fas fa-external-link-alt"></i></a> </h4>
 
-<!--SNIPPET--><blockquote class="tip">   <div class="box-title tip-title" id="tip-how-do-i-create-an-account-on-a-public-galaxy-instance"><button class="gtn-boxify-button tip" type="button" aria-controls="tip-how-do-i-create-an-account-on-a-public-galaxy-instance" aria-expanded="true"><i class="far fa-lightbulb" aria-hidden="true"></i> <span>Tip: How do I create an account on a public Galaxy instance?</span><span class="fold-unfold fa fa-minus-square"></span></button></div>   <ol>   <li>     <p>To create an account at any public Galaxy instance, choose your server from the available <a href="https://galaxyproject.org/use/">list of Galaxy Platforms</a>.</p>     <p>There are several UseGalaxy servers:</p>     <ul>       <li>         <p><a href="https://usegalaxy.org">UseGalaxy.org</a> (<strong>US</strong>)</p>       </li>       <li>         <p><a href="https://usegalaxy.fr">UseGalaxy.fr</a> (<strong>FR</strong>)</p>       </li>       <li>         <p><a href="https://usegalaxy.org.au">UseGalaxy.org.au</a> (<strong>AU</strong>)</p>       </li>       <li>         <p><a href="https://usegalaxy.eu">UseGalaxy.eu</a> (<strong>EU</strong>)</p>       </li>     </ul>   </li>   <li>     <p>Click on <strong>“Login or Register”</strong> in the masthead on the server.</p>     <p><img src="/training-material/faqs/galaxy/images/login_register.png" alt="Login or Register on the top panel" /></p>   </li>   <li>     <p>On the login page, find the <strong>Register here</strong> link and click on it.</p>   </li>   <li>     <p>Fill in the the registration form, then click on <strong>Create</strong>.</p>     <p>Your account should now get created, but will remain inactive until you verify the email address you provided in the registration form.</p>     <p><img src="/training-material/faqs/galaxy/images/unverified_account.png" alt="Banner warning about account with unverified email address" /></p>   </li>   <li>     <p>Check for a <strong>Confirmation Email</strong> in the email you used for account creation.</p>     <p>Missing? Check your <strong>Trash</strong> and <strong>Spam</strong> folders.</p>   </li>   <li>     <p>Click on the <strong>Email confirmation link</strong> to fully activate your account.</p>     <p><i class="fas fa-info-circle" aria-hidden="true"></i><span class="visually-hidden">galaxy-info</span> Delivery of the confimation email is blocked by your email provider or you mistyped the email address in the registration form?</p>     <p>Please do <strong>not</strong> register again, but follow the <a href="/training-material/faqs/galaxy/user_preferences_manage_information.html">instructions to change the email address</a> registered with your account! The confirmation email will be resent to your new address once you have changed it.</p>     <p>Trouble logging in later? Account email addresses and public names are caSe-sensiTive. Check your activation email for formats.</p>   </li> </ol> </blockquote> <!--END_SNIPPET-->
+<!--SNIPPET--><blockquote class="tip">   <div class="box-title tip-title" id="tip-how-do-i-create-an-account-on-a-public-galaxy-instance"><button class="gtn-boxify-button tip" type="button" aria-controls="tip-how-do-i-create-an-account-on-a-public-galaxy-instance" aria-expanded="true"><i class="far fa-lightbulb" aria-hidden="true"></i> <span>Tip: How do I create an account on a public Galaxy instance?</span><span class="fold-unfold fa fa-minus-square"></span></button></div>   <ol>   <li>     <p>To create an account at any public Galaxy instance, choose your server from the available <a href="https://galaxyproject.org/use/">list of Galaxy Platforms</a>.</p>     <p>There are several UseGalaxy servers:</p>     <ul>       <li>         <p><a href="https://usegalaxy.org">UseGalaxy.org</a> (<strong>US</strong>)</p>       </li>       <li>         <p><a href="https://usegalaxy.fr">UseGalaxy.fr</a> (<strong>FR</strong>)</p>       </li>       <li>         <p><a href="https://usegalaxy.eu">UseGalaxy.eu</a> (<strong>EU</strong>)</p>       </li>       <li>         <p><a href="https://usegalaxy.org.au">UseGalaxy.org.au</a> (<strong>AU</strong>)</p>       </li>     </ul>   </li>   <li>     <p>Click on <strong>“Login or Register”</strong> in the masthead on the server.</p>     <p><img src="/training-material/faqs/galaxy/images/login_register.png" alt="Login or Register on the top panel" /></p>   </li>   <li>     <p>On the login page, find the <strong>Register here</strong> link and click on it.</p>   </li>   <li>     <p>Fill in the the registration form, then click on <strong>Create</strong>.</p>     <p>Your account should now get created, but will remain inactive until you verify the email address you provided in the registration form.</p>     <p><img src="/training-material/faqs/galaxy/images/unverified_account.png" alt="Banner warning about account with unverified email address" /></p>   </li>   <li>     <p>Check for a <strong>Confirmation Email</strong> in the email you used for account creation.</p>     <p>Missing? Check your <strong>Trash</strong> and <strong>Spam</strong> folders.</p>   </li>   <li>     <p>Click on the <strong>Email confirmation link</strong> to fully activate your account.</p>     <p><i class="fas fa-info-circle" aria-hidden="true"></i><span class="visually-hidden">galaxy-info</span> Delivery of the confimation email is blocked by your email provider or you mistyped the email address in the registration form?</p>     <p>Please do <strong>not</strong> register again, but follow the <a href="/training-material/faqs/galaxy/user_preferences_manage_information.html">instructions to change the email address</a> registered with your account! The confirmation email will be resent to your new address once you have changed it.</p>     <p>Trouble logging in later? Account email addresses and public names are caSe-sensiTive. Check your activation email for formats.</p>   </li> </ol> </blockquote> <!--END_SNIPPET-->
 
 
 
@@ -1547,7 +1547,7 @@ <h4 class="faq-area"> How can I fix mistakes or expand an existing tutorial usin
 
 <h4 class="faq-area"> How can I get started with contributing? <a href="/training-material/faqs/gtn/contributors_getting_started.html"><i class="fas fa-external-link-alt"></i></a> </h4>
 
-<!--SNIPPET--><blockquote class="tip">   <div class="box-title tip-title" id="tip-how-can-i-get-started-with-contributing"><button class="gtn-boxify-button tip" type="button" aria-controls="tip-how-can-i-get-started-with-contributing" aria-expanded="true"><i class="far fa-lightbulb" aria-hidden="true"></i> <span>Tip: How can I get started with contributing?</span><span class="fold-unfold fa fa-minus-square"></span></button></div>   <p>If you would like to get involved in the project but are unsure where to start, there are some easy ways to contribute which will also help you familiarize yourself with the project!</p>   <p>A great way to help out the project is to test/edit existing tutorials. Pick a tutorial and check the contents. Does everything work as expected? Are there things that could be improved?</p>   <p>Below is a checklist of things to look out for to help you get started. If you feel confident in making changes yourself, please open a pull request, otherwise please file an issue with any problems you run into or suggestions for improvements.</p>   <p>Basic:</p>   <ul>   <li><strong>Test</strong> the tutorial on a running Galaxy instance     <ul>       <li>For example <a href="https://usegalaxy.eu">UseGalaxy.eu</a>, <a href="https://usegalaxy.fr">UseGalaxy.fr</a>, <a href="https://usegalaxy.org">UseGalaxy.org</a>, <a href="https://usegalaxy.org.au">UseGalaxy.org.au</a></li>       <li>Report any issues you run into</li>     </ul>   </li>   <li><strong>Language</strong> editing     <ul>       <li>Fix spelling and grammar mistakes</li>       <li>Simplify the English (to make it more accessible)</li>     </ul>   </li> </ul>   <p>Intermediate:</p>   <ul>   <li><strong>Metadata</strong>     <ul>       <li>Are the objectives, keypoints and time estimate filled in?</li>       <li>Do they fit with the contents of the tutorial?</li>     </ul>   </li>   <li><strong>Content</strong>     <ul>       <li>Is there enough background information provided in the introduction section and throughout the tutorial?</li>       <li><strong>Question boxes</strong>         <ul>           <li>Add questions or question boxes where you think they might be useful (make people think about results they got, test their understanding, etc)</li>           <li>Check that answers are still up-to-date</li>         </ul>       </li>       <li><strong>Screenshots and Videos</strong>         <ul>           <li>Make sure there is also a textual description of the image/video contents</li>           <li>Does the screenshot add value to the tutorial or can it be removed?</li>         </ul>       </li>     </ul>   </li> </ul>   <p>Advanced:</p>   <ul>   <li><strong>Workflows</strong>     <ul>       <li>Add a workflow definition file <code class="language-plaintext highlighter-rouge">.ga</code> if none is present</li>       <li>Check that the existing workflow is up-to-date with the tutorial contents</li>       <li>Enable <a href="https://github.com/usegalaxy-eu/workflow-testing">workflow testing</a></li>     </ul>   </li>   <li><strong>Tours</strong>     <ul>       <li>Add a tour if none exists</li>       <li>Run the existing tour and check that it is up-to-date with the tutorial contents</li>     </ul>   </li>   <li><strong>Datasets</strong>     <ul>       <li>Check that all datasets used in the tutorial are present in Zenodo</li>       <li>Add a data-library.yaml file if none exists</li>     </ul>   </li> </ul>   <p>Another great way to help out the project is by reviewing <a href="https://github.com/galaxyproject/training-material/pulls?q=is%3Apr+is%3Aopen+sort%3Aupdated-desc">open pull requests</a>. You can use the above checklist as a guide for your review. Some documentation about how to add your review in the GitHub interface can be found <a href="https://help.github.com/articles/about-pull-request-reviews/">in GitHub’s PR Reviewing Documentation</a></p> </blockquote> <!--END_SNIPPET-->
+<!--SNIPPET--><blockquote class="tip">   <div class="box-title tip-title" id="tip-how-can-i-get-started-with-contributing"><button class="gtn-boxify-button tip" type="button" aria-controls="tip-how-can-i-get-started-with-contributing" aria-expanded="true"><i class="far fa-lightbulb" aria-hidden="true"></i> <span>Tip: How can I get started with contributing?</span><span class="fold-unfold fa fa-minus-square"></span></button></div>   <p>If you would like to get involved in the project but are unsure where to start, there are some easy ways to contribute which will also help you familiarize yourself with the project!</p>   <p>A great way to help out the project is to test/edit existing tutorials. Pick a tutorial and check the contents. Does everything work as expected? Are there things that could be improved?</p>   <p>Below is a checklist of things to look out for to help you get started. If you feel confident in making changes yourself, please open a pull request, otherwise please file an issue with any problems you run into or suggestions for improvements.</p>   <p>Basic:</p>   <ul>   <li><strong>Test</strong> the tutorial on a running Galaxy instance     <ul>       <li>For example <a href="https://usegalaxy.eu">UseGalaxy.eu</a>, <a href="https://usegalaxy.fr">UseGalaxy.fr</a>, <a href="https://usegalaxy.org.au">UseGalaxy.org.au</a>, <a href="https://usegalaxy.org">UseGalaxy.org</a></li>       <li>Report any issues you run into</li>     </ul>   </li>   <li><strong>Language</strong> editing     <ul>       <li>Fix spelling and grammar mistakes</li>       <li>Simplify the English (to make it more accessible)</li>     </ul>   </li> </ul>   <p>Intermediate:</p>   <ul>   <li><strong>Metadata</strong>     <ul>       <li>Are the objectives, keypoints and time estimate filled in?</li>       <li>Do they fit with the contents of the tutorial?</li>     </ul>   </li>   <li><strong>Content</strong>     <ul>       <li>Is there enough background information provided in the introduction section and throughout the tutorial?</li>       <li><strong>Question boxes</strong>         <ul>           <li>Add questions or question boxes where you think they might be useful (make people think about results they got, test their understanding, etc)</li>           <li>Check that answers are still up-to-date</li>         </ul>       </li>       <li><strong>Screenshots and Videos</strong>         <ul>           <li>Make sure there is also a textual description of the image/video contents</li>           <li>Does the screenshot add value to the tutorial or can it be removed?</li>         </ul>       </li>     </ul>   </li> </ul>   <p>Advanced:</p>   <ul>   <li><strong>Workflows</strong>     <ul>       <li>Add a workflow definition file <code class="language-plaintext highlighter-rouge">.ga</code> if none is present</li>       <li>Check that the existing workflow is up-to-date with the tutorial contents</li>       <li>Enable <a href="https://github.com/usegalaxy-eu/workflow-testing">workflow testing</a></li>     </ul>   </li>   <li><strong>Tours</strong>     <ul>       <li>Add a tour if none exists</li>       <li>Run the existing tour and check that it is up-to-date with the tutorial contents</li>     </ul>   </li>   <li><strong>Datasets</strong>     <ul>       <li>Check that all datasets used in the tutorial are present in Zenodo</li>       <li>Add a data-library.yaml file if none exists</li>     </ul>   </li> </ul>   <p>Another great way to help out the project is by reviewing <a href="https://github.com/galaxyproject/training-material/pulls?q=is%3Apr+is%3Aopen+sort%3Aupdated-desc">open pull requests</a>. You can use the above checklist as a guide for your review. Some documentation about how to add your review in the GitHub interface can be found <a href="https://help.github.com/articles/about-pull-request-reviews/">in GitHub’s PR Reviewing Documentation</a></p> </blockquote> <!--END_SNIPPET-->
 
 
 
@@ -3862,7 +3862,7 @@ <h5>Still have questions?</h5>
 				</ul>
 				<span style="font-size: 1.3em">Framework</span>
 				<ul class="no-bullets">
-					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/b7a7e0aae9e92bbfeb85ca299f0c54ded3cb073c">b7a7e0a</a></li>
+					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/bb2096720a599c30a32dd1c3a75a9542bc5f7cd0">bb20967</a></li>
 					<li><a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a> Licensed</li>
 					<li><a href="https://jekyllrb.com/">Jekyll(4.3.2 | production)</a></li>
 				</ul>

api/configuration.json

@@ -135,7 +135,7 @@
       "resources": [
         "assets/js/theme.js"
       ],
-      "timestamp": 1727256283,
+      "timestamp": 1727277462,
       "hash": "f1f2de89",
       "path": "/assets/js/bundle.theme.f1f2de89.js"
     },
@@ -152,7 +152,7 @@
         "assets/js/anchor.min.js",
         "assets/js/main.js"
       ],
-      "timestamp": 1727256283,
+      "timestamp": 1727277462,
       "hash": "40d4e218",
       "path": "/assets/js/bundle.main.40d4e218.js"
     }
@@ -341,8 +341,8 @@
   "serving": false,
   "boxify": {
   },
-  "git_revision": "b7a7e0aae9e92bbfeb85ca299f0c54ded3cb073c",
-  "git_revision_short": "b7a7e0a",
+  "git_revision": "bb2096720a599c30a32dd1c3a75a9542bc5f7cd0",
+  "git_revision_short": "bb20967",
   "gtn_fork": "galaxyproject",
   "git_tags": [