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bullet points of ploting types with link + fixing paragraph look
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lenaarenot committed Oct 18, 2024
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3 changes: 2 additions & 1 deletion topics/microbiome/tutorials/visualisation-ampvis/tutorial.md
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Expand Up @@ -78,7 +78,7 @@ First of all you can put your data into
- {% tool [rarefaction curve](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_rarecurve/ampvis2_rarecurve/2.8.9+galaxy0) %}
- a [rarefaction curve](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_rarecurve/ampvis2_rarecurve/2.8.9+galaxy0)

to explore species richness. Then you can input your data into subsets and finally create:
to explore species richness. Then you can input your data into [subsets](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_subset_samples/ampvis2_subset_samples/2.8.9+galaxy0) and finally create:
- {% tool [heatmap](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_heatmap/ampvis2_heatmap/2.8.9+galaxy0) %}
- a [heatmap](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_heatmap/ampvis2_heatmap/2.8.9+galaxy0)
- {% tool [boxplot](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_boxplot/ampvis2_boxplot/2.8.9+galaxy0) %}
Expand All @@ -87,6 +87,7 @@ to explore species richness. Then you can input your data into subsets and final
- an [ordination plot](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.8.9+galaxy0)
- {% tool [timeseries plot](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_timeseries/ampvis2_timeseries/2.8.9+galaxy0) %}
- a [timeseries plot](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_timeseries/ampvis2_timeseries/2.8.9+galaxy0)

Most of these visualisation methods are described in
[Introduction to ampvis2](https://kasperskytte.github.io/ampvis2/articles/ampvis2.html#heatmap).
![overview of visualisation methods](./images/overview.png
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