Merge pull request #4952 from EngyNasr/pathogenTrainingMay2024Update

Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, training update 2024
galaxyproject · May 29, 2024 · c61f670 · c61f670
2 parents fd2204c + 5af515b
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diff --git a/...orials/pathogen-detection-from-nanopore-foodborne-data/images/AAF37887_tree.png b/...orials/pathogen-detection-from-nanopore-foodborne-data/images/AAF37887_tree.png
diff --git a/...etection-from-nanopore-foodborne-data/images/FoodBorne-Workflow-updated-old.png b/...etection-from-nanopore-foodborne-data/images/FoodBorne-Workflow-updated-old.png
diff --git a/...en-detection-from-nanopore-foodborne-data/images/FoodBorne-Workflow-updated.png b/...en-detection-from-nanopore-foodborne-data/images/FoodBorne-Workflow-updated.png
diff --git a/...rials/pathogen-detection-from-nanopore-foodborne-data/images/NP_459543_tree.png b/...rials/pathogen-detection-from-nanopore-foodborne-data/images/NP_459543_tree.png
diff --git a/...ogen-detection-from-nanopore-foodborne-data/images/bandage_image_flye_graph.png b/...ogen-detection-from-nanopore-foodborne-data/images/bandage_image_flye_graph.png
diff --git a/...opore-foodborne-data/images/fastqc_per_base_sequence_quality_plot_barcode10.png b/...opore-foodborne-data/images/fastqc_per_base_sequence_quality_plot_barcode10.png
diff --git a/...e/tutorials/pathogen-detection-from-nanopore-foodborne-data/images/heatmap2.png b/...e/tutorials/pathogen-detection-from-nanopore-foodborne-data/images/heatmap2.png
diff --git a/...tion-from-nanopore-foodborne-data/images/krona_taxonomy_pie_chart_barcode11.png b/...tion-from-nanopore-foodborne-data/images/krona_taxonomy_pie_chart_barcode11.png
diff --git a/...s/multiqc_per_base_sequence_quality_plot_barcode10_barcode11_after_trimming.png b/...s/multiqc_per_base_sequence_quality_plot_barcode10_barcode11_after_trimming.png
diff --git a/.../multiqc_per_base_sequence_quality_plot_barcode10_barcode11_before_trimming.png b/.../multiqc_per_base_sequence_quality_plot_barcode10_barcode11_before_trimming.png
diff --git a/...icrobiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.md b/...icrobiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.md
diff --git a/...e-foodborne-data/workflows/Nanopore_Datasets_Pathogen_Tracking_among_all_samples-test.yml b/...e-foodborne-data/workflows/Nanopore_Datasets_Pathogen_Tracking_among_all_samples-test.yml