Skip to content

Commit

Permalink
add viz box
Browse files Browse the repository at this point in the history
  • Loading branch information
hexylena committed Mar 8, 2024
1 parent f105ee0 commit c79daa7
Showing 1 changed file with 30 additions and 0 deletions.
30 changes: 30 additions & 0 deletions topics/transcriptomics/tutorials/minerva-pathways/tutorial.md
Original file line number Diff line number Diff line change
Expand Up @@ -280,4 +280,34 @@ You should have a few outputs, namely the `goseq` outputs, and a table ready for

## MINERVA

> <hands-on-title>Visualise in MINERVA</hands-on-title>
>
> 1. **Click** to expand the final "MINERVA-Ready Table"
>
> 1. Click on the {% icon galaxy-barchart %} (**Visualize**) icon
>
> 1. Select "display at Minerva (SARS-CoV-2 Minerva Map)"
>
> > <tip-title>MINERVA not listed?</tip-title>
> > The MINERVA visualisation is only for correctly formatted files with the correct genome (i.e. human, hg19).
> > If you dont' see MINERVA listed, first check that your dataset is:
> > 1. recognised as a tabular dataset
> >
> > {% snippet faqs/galaxy/datasets_change_datatype.md datatype="tabular" %}
> >
> > 2. Has the correct genome build:
> >
> > {% snippet faqs/galaxy/datasets_change_dbkey.md dbkey="hg19" %}
> >
> > It should be specifically `hg19` not a patch like `hg19Patch5`
> >
> > If that still doesn't work, please check that the Galaxy server you are using is updated to 24.0 or later.
> >
> {: .tip}
>
{: .hands_on}

### Analysis


TODO

0 comments on commit c79daa7

Please sign in to comment.