Skip to content

Commit

Permalink
deploy: 3a5225d
Browse files Browse the repository at this point in the history
  • Loading branch information
@hexylena
hexylena committed Nov 4, 2023
1 parent 3457598 commit f7b1caa
Show file tree
Hide file tree
Showing 3,895 changed files with 55,345 additions and 55,135 deletions.
The diff you're trying to view is too large. We only load the first 3000 changed files.
8 changes: 4 additions & 4 deletions 404.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -57,8 +57,8 @@
<link rel="preload" href="/training-material/assets/fonts/AtkinsonHyperlegible/Atkinson-Hyperlegible-Italic-102a.woff2" as="font" type="font/woff2" crossorigin>
<link rel="preload" href="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML" as="script" crossorigin>
<link rel="preload" href="/training-material/assets/css/main.css?v=3" as="style">
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1698970363' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1698970363' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1699056591' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1699056591' as='script'>
<link rel="stylesheet" href="/training-material/assets/css/main.css?v=3">
<link rel="manifest" href="/training-material/manifest.json">
<meta name="theme-color" content="#2c3143"/>
Expand All @@ -84,7 +84,7 @@

</head>
<body data-spy="scroll" data-target="#toc" data-brightness="auto" data-contrast="auto">
<script src='/training-material/assets/js/bundle.theme.js?v=1698970363'></script>
<script src='/training-material/assets/js/bundle.theme.js?v=1699056591'></script>
<header>
<nav class="navbar navbar-expand-md navbar-dark" aria-label="Site Navigation">
<div class="container">
Expand Down Expand Up @@ -259,7 +259,7 @@ <h2 id="we-cant-seem-to-find-the-page-youre-looking-for">We can’t seem to find
</footer>


<script src='/training-material/assets/js/bundle.main.js?v=1698970363'></script>
<script src='/training-material/assets/js/bundle.main.js?v=1699056591'></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
</body>
</html>
8 changes: 4 additions & 4 deletions accessibility.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -57,8 +57,8 @@
<link rel="preload" href="/training-material/assets/fonts/AtkinsonHyperlegible/Atkinson-Hyperlegible-Italic-102a.woff2" as="font" type="font/woff2" crossorigin>
<link rel="preload" href="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML" as="script" crossorigin>
<link rel="preload" href="/training-material/assets/css/main.css?v=3" as="style">
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1698970363' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1698970363' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1699056591' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1699056591' as='script'>
<link rel="stylesheet" href="/training-material/assets/css/main.css?v=3">
<link rel="manifest" href="/training-material/manifest.json">
<meta name="theme-color" content="#2c3143"/>
Expand All @@ -84,7 +84,7 @@

</head>
<body data-spy="scroll" data-target="#toc" data-brightness="auto" data-contrast="auto">
<script src='/training-material/assets/js/bundle.theme.js?v=1698970363'></script>
<script src='/training-material/assets/js/bundle.theme.js?v=1699056591'></script>
<header>
<nav class="navbar navbar-expand-md navbar-dark" aria-label="Site Navigation">
<div class="container">
Expand Down Expand Up @@ -309,7 +309,7 @@ <h3 id="additional-features">Additional Features</h3>
</footer>


<script src='/training-material/assets/js/bundle.main.js?v=1698970363'></script>
<script src='/training-material/assets/js/bundle.main.js?v=1699056591'></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
</body>
</html>
10 changes: 5 additions & 5 deletions all-faq.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -57,8 +57,8 @@
<link rel="preload" href="/training-material/assets/fonts/AtkinsonHyperlegible/Atkinson-Hyperlegible-Italic-102a.woff2" as="font" type="font/woff2" crossorigin>
<link rel="preload" href="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML" as="script" crossorigin>
<link rel="preload" href="/training-material/assets/css/main.css?v=3" as="style">
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1698970363' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1698970363' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.theme.js?v=1699056591' as='script'>
<link rel='preload' href='/training-material/assets/js/bundle.main.js?v=1699056591' as='script'>
<link rel="stylesheet" href="/training-material/assets/css/main.css?v=3">
<link rel="manifest" href="/training-material/manifest.json">
<meta name="theme-color" content="#2c3143"/>
Expand All @@ -84,7 +84,7 @@

</head>
<body data-spy="scroll" data-target="#toc" data-brightness="auto" data-contrast="auto">
<script src='/training-material/assets/js/bundle.theme.js?v=1698970363'></script>
<script src='/training-material/assets/js/bundle.theme.js?v=1699056591'></script>
<header>
<nav class="navbar navbar-expand-md navbar-dark" aria-label="Site Navigation">
<div class="container">
Expand Down Expand Up @@ -2650,7 +2650,7 @@ <h4 class="faq-area"> Compatible Versions of Galaxy <a href="/training-material/

<h4 class="faq-area"> GTN Stats <a href="/training-material/faqs/gtn/gtn_stats.html"><i class="fas fa-external-link-alt"></i></a> </h4>

<!--SNIPPET--> <!-- tutorial stats --> <div class="row" style="color: var(--text-color-boxtitle)"> <div class="col-md-4"> <div class="gtn-card color-agenda"> <div class="card-title">29</div> <div class="card-text">Topics</div> </div> </div> <div class="col-md-4"> <div class="gtn-card color-tip"> <div class="card-title">375</div> <div class="card-text">Tutorials</div> </div> </div> <div class="col-md-4"> <div class="gtn-card color-details"> <div class="card-title">402</div> <div class="card-text"><abbr title="Frequently Asked Questions">FAQs</abbr></div> </div> </div> <div class="col-md-6"> <div class="gtn-card color-comment"> <div class="card-title">315</div> <div class="card-text">Contributors</div> </div> </div> <div class="col-md-6"> <div class="gtn-card color-handson"> <div class="card-title">8.3</div> <div class="card-text">Years</div> </div> </div> </div> <!--END_SNIPPET-->
<!--SNIPPET--> <!-- tutorial stats --> <div class="row" style="color: var(--text-color-boxtitle)"> <div class="col-md-4"> <div class="gtn-card color-agenda"> <div class="card-title">29</div> <div class="card-text">Topics</div> </div> </div> <div class="col-md-4"> <div class="gtn-card color-tip"> <div class="card-title">375</div> <div class="card-text">Tutorials</div> </div> </div> <div class="col-md-4"> <div class="gtn-card color-details"> <div class="card-title">402</div> <div class="card-text"><abbr title="Frequently Asked Questions">FAQs</abbr></div> </div> </div> <div class="col-md-6"> <div class="gtn-card color-comment"> <div class="card-title">315</div> <div class="card-text">Contributors</div> </div> </div> <div class="col-md-6"> <div class="gtn-card color-handson"> <div class="card-title">8.4</div> <div class="card-text">Years</div> </div> </div> </div> <!--END_SNIPPET-->



Expand Down Expand Up @@ -3551,7 +3551,7 @@ <h5>Still have questions?</h5>
</footer>


<script src='/training-material/assets/js/bundle.main.js?v=1698970363'></script>
<script src='/training-material/assets/js/bundle.main.js?v=1699056591'></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
</body>
</html>
6 changes: 3 additions & 3 deletions api/configuration.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -133,7 +133,7 @@
"resources": [
"assets/js/theme.js"
],
"timestamp": 1698970363
"timestamp": 1699056591
},
"main": {
"preload": true,
Expand All @@ -146,7 +146,7 @@
"assets/js/list.min.js",
"assets/js/main.js"
],
"timestamp": 1698970363
"timestamp": 1699056591
}
},
"figurify": {
Expand Down Expand Up @@ -358,5 +358,5 @@
"2023-11-01",
"2023-10-01"
],
"age": 8.347707049965777
"age": 8.350444900752908
}
2 changes: 2 additions & 0 deletions api/feedback.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2426,3 +2426,5 @@
2424,5,,,,A short introduction to Galaxy,Introduction to Galaxy Analyses,2023-10,2023-10-31
2425,4,It was very clear and detailed,"Some of the options were not updated, or at least they show different in my browser (galaxy.ue). Specifically in the FastQC ""short...""",,Breve introducción a Galaxy - en español,Introduction to Galaxy Analyses,2023-10,2023-10-31
2426,4,,,,A short introduction to Galaxy,Introduction to Galaxy Analyses,2023-11,2023-11-01
2427,5,,More examples of poor quality reads.,,Quality Control,Sequence analysis,2023-11,2023-11-03
2428,5,"Very clear, providing a first glance on the main actions with Galaxy.","Maybe the tutorial should be updated according to new versions of web Galaxy. Also, the reason for the second renaming (as ""FASTQ reads"") during the creation of a workflow is not well justified.",,A short introduction to Galaxy,Introduction to Galaxy Analyses,2023-11,2023-11-03
22 changes: 22 additions & 0 deletions api/feedback.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -26695,5 +26695,27 @@
"topic": "Introduction to Galaxy Analyses",
"month": "2023-11",
"date": "2023-11-01"
},
{
"": "2427",
"note": "5",
"pro": null,
"con": "More examples of poor quality reads.",
"anonymous": null,
"tutorial": "Quality Control",
"topic": "Sequence analysis",
"month": "2023-11",
"date": "2023-11-03"
},
{
"": "2428",
"note": "5",
"pro": "Very clear, providing a first glance on the main actions with Galaxy.",
"con": "Maybe the tutorial should be updated according to new versions of web Galaxy. Also, the reason for the second renaming (as \"FASTQ reads\") during the creation of a workflow is not well justified.",
"anonymous": null,
"tutorial": "A short introduction to Galaxy",
"topic": "Introduction to Galaxy Analyses",
"month": "2023-11",
"date": "2023-11-03"
}
]
2 changes: 1 addition & 1 deletion api/psl.json
View file

Large diffs are not rendered by default.

50 changes: 25 additions & 25 deletions api/topics/assembly.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -152,7 +152,7 @@
],
"name": "Intro to Genome Assembly",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/general-introduction/tutorial.json",
Expand Down Expand Up @@ -417,7 +417,7 @@
],
"name": "Genome Assembly of MRSA using Oxford Nanopore MinION Data (imported from uploaded file)",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/mrsa-nanopore/tutorial.json",
Expand Down Expand Up @@ -741,7 +741,7 @@
],
"name": "Chloroplast-genome-assembly-and-annotation",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/chloroplast-assembly/tutorial.json",
Expand Down Expand Up @@ -1013,7 +1013,7 @@
],
"name": "Ecoli Comparison",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/ecoli_comparison/tutorial.json",
Expand Down Expand Up @@ -1338,7 +1338,7 @@
],
"name": "VGP assembly: training workflow",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/vgp_workflow_training/tutorial.json",
Expand Down Expand Up @@ -1700,7 +1700,7 @@
],
"name": "VGP assembly: training workflow",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/vgp_genome_assembly/tutorial.json",
Expand Down Expand Up @@ -2181,7 +2181,7 @@
],
"name": "Debruijn Graph",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/debruijn-graph-assembly/tutorial.json",
Expand Down Expand Up @@ -2398,7 +2398,7 @@
],
"name": "assembly_with_preprocessing",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "assembly_with_preprocessing_and_sra_download.ga",
Expand All @@ -2414,7 +2414,7 @@
],
"name": "assembly_with_preprocessing_and_sra_download",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/assembly-with-preprocessing/tutorial.json",
Expand Down Expand Up @@ -2750,7 +2750,7 @@
],
"name": "Genome Assembly Quality Control",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/assembly-quality-control/tutorial.json",
Expand Down Expand Up @@ -2917,7 +2917,7 @@
],
"name": "Metagenomics assembly tutorial workflow",
"test_results": null,
"modified": "2023-11-03 00:12:49 +0000"
"modified": "2023-11-04 00:09:54 +0000"
},
{
"workflow": "workflow-generate-dataset-for-assembly-tutorial.ga",
Expand All @@ -2933,7 +2933,7 @@
],
"name": "workflow-generate-dataset-for-assembly-tutorial",
"test_results": null,
"modified": "2023-11-03 00:12:49 +0000"
"modified": "2023-11-04 00:09:54 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/metagenomics-assembly/tutorial.json",
Expand Down Expand Up @@ -3282,7 +3282,7 @@
],
"name": "Genome Assembly of MRSA using Illumina MiSeq Data",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/mrsa-illumina/tutorial.json",
Expand Down Expand Up @@ -3605,7 +3605,7 @@
],
"name": "Unicycler training",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/unicycler-assembly/tutorial.json",
Expand Down Expand Up @@ -3820,7 +3820,7 @@
],
"name": "Assembly polishing",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-Assembly_with_Flye.ga",
Expand All @@ -3840,7 +3840,7 @@
],
"name": "Assembly with Flye",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-Assess_genome_quality.ga",
Expand All @@ -3860,7 +3860,7 @@
],
"name": "Assess genome quality",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-Combined_workflows_for_large_genome_assembly.ga",
Expand All @@ -3880,7 +3880,7 @@
],
"name": "Combined workflows for large genome assembly",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-Data_QC.ga",
Expand All @@ -3900,7 +3900,7 @@
],
"name": "Data QC",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-Racon_polish_with_Illumina_reads_x2.ga",
Expand All @@ -3920,7 +3920,7 @@
],
"name": "Racon polish with Illumina reads (R1 only), x2",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-Racon_polish_with_long_reads_x4.ga",
Expand All @@ -3940,7 +3940,7 @@
],
"name": "Racon polish with long reads, x4",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-Trim_and_filter_reads.ga",
Expand All @@ -3960,7 +3960,7 @@
],
"name": "Trim and filter reads - fastp",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
},
{
"workflow": "Galaxy-Workflow-kmer_counting.ga",
Expand All @@ -3980,7 +3980,7 @@
],
"name": "kmer counting - meryl",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/largegenome/tutorial.json",
Expand Down Expand Up @@ -4311,7 +4311,7 @@
],
"name": "Genome Assembly using PacBio data",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/flye-assembly/tutorial.json",
Expand Down Expand Up @@ -4493,7 +4493,7 @@
],
"name": "Post-assembly workflow",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/ERGA-post-assembly-QC/tutorial.json",
Expand Down
2 changes: 1 addition & 1 deletion api/topics/assembly/tutorials/ERGA-post-assembly-QC/tutorial.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,7 @@
],
"name": "Post-assembly workflow",
"test_results": null,
"modified": "2023-11-03 00:12:44 +0000"
"modified": "2023-11-04 00:09:51 +0000"
}
],
"api": "https://training.galaxyproject.org/training-material/api/topics/assembly/tutorials/ERGA-post-assembly-QC/tutorial.json",
Expand Down
Loading

0 comments on commit f7b1caa

Please sign in to comment.