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Adding tutorial on how to clean and manage AB1 files from Sanger sequencing #4597

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ecd4555
Add AB1 sanger tuto files
ColineRoyaux Dec 15, 2023
a834d03
Images Sanger tutorial
ColineRoyaux Dec 15, 2023
f6f9423
Update tutorial.md first pass
yvanlebras Dec 16, 2023
6fbf393
Update contrib
ColineRoyaux Dec 18, 2023
5a5a470
Merge branch 'galaxyproject:main' into main
ColineRoyaux Dec 19, 2023
7bd2866
Move files from ecology to sequence_analysis topic
ColineRoyaux Dec 19, 2023
81705a1
Move files from ecology to sequence analysis
ColineRoyaux Dec 19, 2023
1d51e2d
Move files from ecology to sequence analysis
ColineRoyaux Dec 19, 2023
9752412
Move files from ecology to sequence analysis
ColineRoyaux Dec 19, 2023
7165c77
Correct linting
ColineRoyaux Dec 19, 2023
425910e
Update topics/sequence-analysis/tutorials/Manage_AB1_Sanger/tutorial.md
ColineRoyaux Dec 19, 2023
2194243
remove colons
ColineRoyaux Dec 19, 2023
03e5a4f
Remove colons
ColineRoyaux Dec 19, 2023
0ad9344
Update topics/sequence-analysis/tutorials/Manage_AB1_Sanger/tutorial.md
ColineRoyaux Jan 2, 2024
2f31225
Update topics/sequence-analysis/tutorials/Manage_AB1_Sanger/tutorial.md
ColineRoyaux Jan 2, 2024
39615b9
Question-solution
ColineRoyaux Jan 2, 2024
bf907f6
Add creator and license
ColineRoyaux Jan 2, 2024
9b2a399
Update workflow
ColineRoyaux Jan 2, 2024
bdbaf98
Merge branch 'galaxyproject:main' into main
ColineRoyaux Jan 2, 2024
46d3e79
barchat -> charchart
ColineRoyaux Jan 2, 2024
2e39f6c
Delete topics/sequence-analysis/tutorials/Manage_AB1_Sanger/workflows…
ColineRoyaux Jan 2, 2024
f361ceb
Apply suggestions from code review
hexylena Jan 8, 2024
26f946b
Update topics/sequence-analysis/tutorials/Manage_AB1_Sanger/tutorial.md
hexylena Jan 8, 2024
c8ffb97
Remove space from snippet
hexylena Jan 8, 2024
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12 changes: 12 additions & 0 deletions topics/ecology/tutorials/Manage_AB1_Sanger/data-library.yaml
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---
destination:
type: library
name: GTN - Material
description: Galaxy Training Network Material
synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org
items:
- name: New topic
description: Topic summary
items:
- name: 'Clean and manage Sanger sequences from raw files to aligned consensus '
items: []
3 changes: 3 additions & 0 deletions topics/ecology/tutorials/Manage_AB1_Sanger/faqs/index.md
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---
layout: faq-page
---
27 changes: 27 additions & 0 deletions topics/ecology/tutorials/Manage_AB1_Sanger/tutorial.bib
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# This is the bibliography file for your tutorial.
#
# To add bibliography (bibtex) entries here, follow these steps:
# 1) Find the DOI for the article you want to cite
# 2) Go to https://doi2bib.org and fill in the DOI
# 3) Copy the resulting bibtex entry into this file
#
# To cite the example below, in your tutorial.md file
# use {% cite Batut2018 %}
#
# If you want to cite an online resourse (website etc)
# you can use the 'online' format (see below)
#
# You can remove the examples below

@article{Garavaglia2022,
doi = {10.1016/j.parkreldis.2022.03.007},
url = {https://doi.org/10.1016/j.parkreldis.2022.03.007},
year = {2022},
volume = {97},
pages = {52-56},
author = {Garavaglia B, Vallian S, Romito LM, Straccia G, Capecci M, Invernizzi F, Andrenelli E, Kazemi A, Boesch S, Kopajtich R, Olfati N, Shariati M, Shoeibi A, Sadr-Nabavi A, Prokisch H, Winkelmann J, Zech M.},
title = {AOPEP variants as a novel cause of recessive dystonia: Generalized dystonia and dystonia-parkinsonism},
journal = {Parkinsonism and related disorders}
}

530 changes: 530 additions & 0 deletions topics/ecology/tutorials/Manage_AB1_Sanger/tutorial.md

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3 changes: 3 additions & 0 deletions topics/ecology/tutorials/Manage_AB1_Sanger/workflows/index.md
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---
layout: workflow-list
---

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