Merge pull request #754 from galaxyproject/create-pull-request/patch

Update all repos 2024-06-05
galaxyproject · Jun 5, 2024 · 63246c9 · 63246c9
2 parents 554be9f + 3d34bc1
commit 63246c9
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diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock
@@ -229,6 +229,7 @@ tools:
   - 037a11682176
   - 200c378d85f3
   - 2c68b0c38785
+  - 4839e590cb26
   - 809dfc93d593
   - ac8250086ac3
   - ba6f87115e13
@@ -250,6 +251,7 @@ tools:
   owner: iuc
   revisions:
   - 02d81b994ef5
+  - 42818629ec4c
   - 4934c0ac6197
   - adc0645b945c
   tool_panel_section_id: annotation
@@ -303,6 +305,7 @@ tools:
   revisions:
   - 45d4d26e01b5
   - c147914c9f02
+  - f5114c60dc95
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: sortmerna
@@ -319,6 +322,7 @@ tools:
   revisions:
   - 4863b1dbe8f0
   - 77cfe958b5ea
+  - b6ea129299ea
   - f61366a4a14e
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
@@ -365,6 +369,7 @@ tools:
 - name: repeatmodeler
   owner: csbl
   revisions:
+  - 4a172d211285
   - 8661b2607b7e
   - fbe22cb3c869
   tool_panel_section_id: annotation

diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock
@@ -76,6 +76,7 @@ tools:
   owner: nml
   revisions:
   - 05c394313b1c
+  - 99ecfdafc64f
   - e731ea24e48d
   - fd128c111ab0
   tool_panel_section_id: assembly
@@ -195,6 +196,7 @@ tools:
   - 33368fec3b70
   - 7897763d14ec
   - b8c00ce5dfa0
+  - d5887ace0dd4
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: bandage
@@ -387,26 +389,30 @@ tools:
   revisions:
   - 5412142130ad
   - 55a53b5e308d
+  - 56bb29747b4d
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: pairtools_parse
   owner: iuc
   revisions:
   - 44cb74c154bc
   - b0a1f128fa15
+  - d3a7b17714c1
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: pairtools_sort
   owner: iuc
   revisions:
   - 8cffb8fc34f0
   - 8ed44487c834
+  - fdd073110081
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: pairtools_split
   owner: iuc
   revisions:
   - 060f0fed864e
+  - 39df08e91cdf
   - 53d73d58e105
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
@@ -415,5 +421,6 @@ tools:
   revisions:
   - 6cbca5661205
   - 81fc1418fbfb
+  - c20a07c9237b
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
diff --git a/usegalaxy.org/bbtools.yml.lock b/usegalaxy.org/bbtools.yml.lock
@@ -10,12 +10,14 @@ tools:
   - 159b04e36791
   - 1c427e24fb79
   - bf0cb5dd02f2
+  - d1f62024a08b
   tool_panel_section_id: bbtools
   tool_panel_section_label: BBTools
 - name: bbtools_bbmap
   owner: iuc
   revisions:
   - 3171f7f52576
+  - 3f94a2e3d513
   - 517464809c33
   - 7f19559b8b55
   - b394de3cf6e8
@@ -24,6 +26,7 @@ tools:
 - name: bbtools_bbmerge
   owner: iuc
   revisions:
+  - 1af48f9cc27b
   - 5d8b93c0731f
   - 6d084528a6f1
   - 82ced0e47b9d
@@ -34,6 +37,7 @@ tools:
   owner: iuc
   revisions:
   - 057c13b2dc42
+  - 1baa4ad1ac2f
   - 1ef267476a17
   - 3fc12917bbdb
   - a9329b77db78
@@ -42,6 +46,7 @@ tools:
 - name: bbtools_callvariants
   owner: iuc
   revisions:
+  - 66b138a2e74c
   - adec76ebc868
   - df9743790176
   - ee407fae3ccd
@@ -53,6 +58,7 @@ tools:
   revisions:
   - 20aef74d20a1
   - 654c9da47f74
+  - cbc75076778f
   - e4fb34b79770
   - eaeb387d1244
   tool_panel_section_id: bbtools

diff --git a/usegalaxy.org/biodiversity_data_exploration.yml.lock b/usegalaxy.org/biodiversity_data_exploration.yml.lock
@@ -6,6 +6,7 @@ tools:
 - name: obisindicators
   owner: ecology
   revisions:
+  - 393957ecc97d
   - 4e7c1fb5e894
   tool_panel_section_id: biodiversity_data_exploration
   tool_panel_section_label: Biodiversity data exploration
diff --git a/usegalaxy.org/chemicaltoolbox.yml.lock b/usegalaxy.org/chemicaltoolbox.yml.lock
@@ -239,6 +239,7 @@ tools:
 - name: alphafold2
   owner: galaxy-australia
   revisions:
+  - 2f7702fd0a4c
   - 5b85006245f3
   tool_panel_section_id: chemicaltoolbox
   tool_panel_section_label: ChemicalToolBox

diff --git a/usegalaxy.org/climate_analysis.yml.lock b/usegalaxy.org/climate_analysis.yml.lock
@@ -7,17 +7,20 @@ tools:
   owner: climate
   revisions:
   - b525b88bc941
+  - efaa93ed5a79
   tool_panel_section_id: climate_analysis
   tool_panel_section_label: Climate Analysis
 - name: climate_stripes
   owner: climate
   revisions:
+  - abdc27e01dca
   - c6f2435d680b
   tool_panel_section_id: climate_analysis
   tool_panel_section_label: Climate Analysis
 - name: c3s
   owner: climate
   revisions:
   - 250554670f72
+  - bd153c794da1
   tool_panel_section_id: climate_analysis
   tool_panel_section_label: Climate Analysis
diff --git a/usegalaxy.org/collection_operations.yml.lock b/usegalaxy.org/collection_operations.yml.lock
@@ -28,6 +28,7 @@ tools:
   owner: bgruening
   revisions:
   - 0046692724f9
+  - 2dae863c8f42
   - 6cbe2f30c2d7
   - baabc30154cd
   - d57735dd27b0

diff --git a/usegalaxy.org/data_managers.yml.lock b/usegalaxy.org/data_managers.yml.lock
@@ -61,12 +61,14 @@ tools:
 - name: data_manager_bowtie_index_builder
   owner: iuc
   revisions:
+  - 39a922d01b0d
   - cb157f55b4fd
   tool_panel_section_id: data_managers
   tool_panel_section_label: Data Managers
 - name: data_manager_kallisto_index_builder
   owner: iuc
   revisions:
+  - 15c2fc266540
   - 4c7ebbad42cf
   tool_panel_section_id: data_managers
   tool_panel_section_label: Data Managers
@@ -80,11 +82,13 @@ tools:
   owner: iuc
   revisions:
   - 1550b1741780
+  - 898b956719ee
   tool_panel_section_id: data_managers
   tool_panel_section_label: Data Managers
 - name: data_manager_fetch_ncbi_taxonomy
   owner: devteam
   revisions:
+  - 34a5799a65fa
   - 6dd9e00dea95
   tool_panel_section_id: data_managers
   tool_panel_section_label: Data Managers

diff --git a/usegalaxy.org/evolution.yml.lock b/usegalaxy.org/evolution.yml.lock
@@ -22,6 +22,7 @@ tools:
   - 24d024316465
   - 524d31add34a
   - 563c3aa769f2
+  - 70acec670c30
   - 973a28be3b7f
   - 9b892d7f82cc
   - b8476e82ac20

diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock
@@ -28,6 +28,7 @@ tools:
   - de6cebe3c043
   - e4691e1589d3
   - f5fdf41c08b8
+  - fe74900d6dc7
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: flash
@@ -345,6 +346,7 @@ tools:
   owner: peterjc
   revisions:
   - 141612f8c3e3
+  - 85ef5f5a0562
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: umi_tools_extract

diff --git a/usegalaxy.org/fastq_quality_control.yml.lock b/usegalaxy.org/fastq_quality_control.yml.lock
@@ -16,6 +16,7 @@ tools:
   owner: pjbriggs
   revisions:
   - 898b67846b47
+  - b9aaed85cbd1
   - d94aff5ee623
   - dfa082f84068
   tool_panel_section_id: fastq_quality_control

diff --git a/usegalaxy.org/filter_and_sort.yml.lock b/usegalaxy.org/filter_and_sort.yml.lock
@@ -7,5 +7,6 @@ tools:
   owner: peterjc
   revisions:
   - 7c40a1fbc82e
+  - bdaefd241921
   tool_panel_section_id: filter_and_sort
   tool_panel_section_label: Filter and Sort
diff --git a/usegalaxy.org/get_data.yml.lock b/usegalaxy.org/get_data.yml.lock
@@ -10,6 +10,7 @@ tools:
   - 248f85ff0733
   - 4317d3cb6cba
   - 4df8de2d0e48
+  - 516a54ddf218
   - 653e89d73fc4
   - 6591f049cf7e
   - 69ebb7f46e45

diff --git a/usegalaxy.org/gis_data_handling.yml.lock b/usegalaxy.org/gis_data_handling.yml.lock
@@ -6,30 +6,35 @@ tools:
 - name: xarray_metadata_info
   owner: ecology
   revisions:
+  - 00de53d18b99
   - e8650cdf092f
   tool_panel_section_id: gis_data_handling
   tool_panel_section_label: GIS Data Handling
 - name: xarray_select
   owner: ecology
   revisions:
   - 6baac361495b
+  - b393815e4cb7
   tool_panel_section_id: gis_data_handling
   tool_panel_section_label: GIS Data Handling
 - name: xarray_netcdf2netcdf
   owner: ecology
   revisions:
   - 1a91e551f3a9
+  - c91c27b63fb2
   tool_panel_section_id: gis_data_handling
   tool_panel_section_label: GIS Data Handling
 - name: xarray_coords_info
   owner: ecology
   revisions:
   - 6015f30a7258
+  - 663e6f115a76
   tool_panel_section_id: gis_data_handling
   tool_panel_section_label: GIS Data Handling
 - name: xarray_mapplot
   owner: ecology
   revisions:
+  - 506b6d6880ff
   - d7479b6dfbe8
   tool_panel_section_id: gis_data_handling
   tool_panel_section_label: GIS Data Handling
diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock
@@ -27,6 +27,7 @@ tools:
 - name: plotly_ml_performance_plots
   owner: bgruening
   revisions:
+  - 1c5dcef5ce0f
   - 62e3a4e8c54c
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
@@ -303,6 +304,7 @@ tools:
   revisions:
   - 73b8cb5bddcd
   - 83c573f2e73c
+  - a363ba287b88
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: krona_text
@@ -315,5 +317,6 @@ tools:
   owner: fubar
   revisions:
   - 0e592dcaeb7f
+  - 74074746ccd8
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock
@@ -23,6 +23,7 @@ tools:
   - 0d4acadabb04
   - 749c918495f7
   - c3dd1aeb7d07
+  - d5ceb9f3c25b
   - f6877ad76b00
   tool_panel_section_id: mapping
   tool_panel_section_label: Mapping
@@ -39,6 +40,7 @@ tools:
   owner: devteam
   revisions:
   - 01ac0a5fedc3
+  - 2477830927ec
   - 3fe632431b68
   - 64f11cf59c6e
   - e188dc7a68e6
@@ -84,6 +86,7 @@ tools:
   - 6da3972210ee
   - a6ea26c1f225
   - b4e6819b25ef
+  - cf1322aeb137
   - d82648ad25a3
   tool_panel_section_id: mapping
   tool_panel_section_label: Mapping
@@ -140,6 +143,7 @@ tools:
   owner: iuc
   revisions:
   - 3171f7f52576
+  - 3f94a2e3d513
   - 517464809c33
   - 7f19559b8b55
   - 858a65b52cf9