Running Maxquant on pulsar node

[mthang]

Hi there and @bgruening ,
This is just an PR to Galaxy-P maxquant. Currently, Galaxy Australia has cloned this Maxquant and made some modification to include DotNet and updated the maxquant from 1.6.17 to 2.0.3.0 in our maxquant.xml https://github.com/usegalaxy-au/tools-au/blob/master/tools/maxquant/maxquant.xml , so the maxquant can run on the remote pulsar node. We also increase the size of vm.max_map_count on the pulsar to prevent the tool from crashing.

tools-galaxyp/tools/maxquant/maxquant.xml

Line 26 in 423304b

sed -i -E 's:(maxQuantVersion>)1.6.5.0(<):\1'1.6.17.0'\2:' mqpar.xml

[bgruening]

Thanks, @mthang for the update. Are you planning to contribute your modifications back to this repo?

[mthang]

@bgruening
Yes. GA had this discussion and plan, so we are happy to contribute our modifications back to the repo. Can you please let me know what I need to do ?

Best,
Mike

[bgruening]

@mthang you push your changes to this repo. The tool wrapper is hosted here and everyone can contribute fixes.

[bgruening]

@mthang please see #698

Now both versions are diverging I guess.