Fix mpi include issue on CI runner #123
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| name: ParFlow CI Test | ||
| on: [push, pull_request] | ||
| jobs: | ||
| style-check: | ||
| runs-on: ubuntu-22.04 | ||
| name: Check Style | ||
| steps: | ||
| - name: Checkout commit | ||
| uses: actions/checkout@v4 | ||
| - name: Package Install | ||
| uses: awalsh128/cache-apt-pkgs-action@latest | ||
| with: | ||
| packages: curl cmake build-essential tcl-dev tk-dev | ||
| version: 1.0 | ||
| execute_install_scripts: true | ||
| - name: Cache dependencies | ||
| uses: actions/cache@v4 | ||
| id: cache-parflow-style-dependencies | ||
| env: | ||
| cache-name: cache-parflow-style-dependencies | ||
| cache-parflow-style-hit: ${{steps.cache-parflow-style-dependencies.outputs.cache-hit}} | ||
| with: | ||
| path: "~/depend" | ||
| key: cache-check-style-${{ secrets.CACHE_VERSION }} | ||
| - name: Directory Setup | ||
| run: | | ||
| mkdir -p $HOME/install | ||
| # Set necessary vars | ||
| PARFLOW_DIR="$HOME/install" | ||
| PARFLOW_DEP_DIR="$HOME/depend" | ||
| LD_LIBRARY_PATH=${PARFLOW_DEP_DIR}/lib64:${PARFLOW_DEP_DIR}/lib | ||
| # Create folders | ||
| mkdir -p ${PARFLOW_DIR} ${PARFLOW_DEP_DIR}/{include,lib} | ||
| # Verify if paths were correctly set | ||
| echo "PARFLOW_DIR=${PARFLOW_DIR}" | ||
| echo "PARFLOW_DEP_DIR=${PARFLOW_DEP_DIR}" | ||
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" | ||
| # Vars pushed to GITHUB_ENV take effect only on the next CI steps. | ||
| echo "PARFLOW_DIR=${PARFLOW_DIR}" >> $GITHUB_ENV | ||
| echo "PARFLOW_DEP_DIR=${PARFLOW_DEP_DIR}" >> $GITHUB_ENV | ||
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> $GITHUB_ENV | ||
| echo "$HOME/depend/bin" >> $GITHUB_PATH | ||
| echo "$PARFLOW_DIR/bin" >> $GITHUB_PATH | ||
| - name: Build Uncrustify | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-style-dependencies.outputs.cache-hit}} | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| echo "cache-check-style-${{ secrets.CACHE_VERSION }}" > $HOME/depend/cache-key | ||
| curl -L -o uncrustify-0.79.0.tar.gz https://github.com/uncrustify/uncrustify/archive/uncrustify-0.79.0.tar.gz | ||
| tar -xf uncrustify-0.79.0.tar.gz | ||
| cd uncrustify-uncrustify-0.79.0 | ||
| mkdir build | ||
| cd build | ||
| cmake -DCMAKE_INSTALL_PREFIX=/usr/local .. | ||
| make | ||
| sudo make -j 2 install | ||
| cd ../.. | ||
| rm -fr uncrustify-uncrustify-0.79.0 uncrustify-0.79.0.tar.gz | ||
| fi | ||
| - name: CMake Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-style-dependencies.outputs.cache-hit}} | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| echo "Installing" | ||
| mkdir -p $HOME/depend/{include,lib} | ||
| cd $HOME/depend | ||
| echo "cache-${{ matrix.config.os }}-${{ matrix.config.backend }}-${{ secrets.CACHE_VERSION }}" > $HOME/depend/cache-key | ||
| wget -nv --no-check-certificate https://github.com/Kitware/CMake/releases/download/v3.25.1/cmake-3.25.1-linux-x86_64.tar.gz | ||
| tar -xf cmake-3.25.1-linux-x86_64.tar.gz | ||
| $HOME/depend/cmake-3.25.1-linux-x86_64/bin/cmake --version | ||
| echo "$HOME/depend/cmake-3.25.1-linux-x86_64/bin" >> $GITHUB_PATH | ||
| fi | ||
| - name: ParFlow CMake Configure | ||
| run: | | ||
| cmake -Bbuild -DPARFLOW_ENABLE_PYTHON=ON -DCMAKE_INSTALL_PREFIX=$PARFLOW_DIR | ||
| - name: ParFlow CMake Build | ||
| run: (cd build; make -j 2 install) | ||
| - name: Run Uncrustify | ||
| run: | | ||
| ./bin/pfformat --check | ||
| build: | ||
| name: ${{ matrix.config.name }} | ||
| runs-on: ${{ matrix.config.os }} | ||
| strategy: | ||
| # fail-fast: true | ||
| matrix: | ||
| config: | ||
| - { | ||
| name: "Ubuntu 24.04 GCC", | ||
| os: ubuntu-24.04, | ||
| cudaos: 'ubuntu2404', | ||
| cc: "gcc", cxx: "g++", fc: "gfortran", | ||
| python: "false", | ||
| backend: "none", | ||
| amps_layer: mpi1, | ||
| netcdf: "true" | ||
| } | ||
| - { | ||
| name: "Ubuntu 24.04 LLVM", | ||
| os: ubuntu-24.04, | ||
| cudaos: 'ubuntu2404', | ||
| cc: "clang-18", cxx: "clang++-18", fc: "gfortran", | ||
| python: "false", | ||
| backend: "none", | ||
| amps_layer: mpi1, | ||
| netcdf: "true" | ||
| } | ||
| - { | ||
| name: "Ubuntu 22.04 GCC Python", | ||
| os: ubuntu-22.04, | ||
| cudaos: 'ubuntu2204', | ||
| cc: "gcc", cxx: "g++", fc: "gfortran", | ||
| python: "true", | ||
| backend: "none", | ||
| amps_layer: mpi1, | ||
| netcdf: "true" | ||
| } | ||
| - { | ||
| name: "Ubuntu 20.04 GCC Python", | ||
| os: ubuntu-20.04, | ||
| cudaos: 'ubuntu2004', | ||
| cc: "gcc", cxx: "g++", fc: "gfortran", | ||
| python: "true", | ||
| backend: "none", | ||
| amps_layer: mpi1, | ||
| netcdf: "false" | ||
| } | ||
| - { | ||
| name: "Ubuntu 22.04 GCC OMP", | ||
| os: ubuntu-22.04, | ||
| cudaos: 'ubuntu2204', | ||
| cc: "gcc", cxx: "g++", fc: "gfortran", | ||
| python: "false", | ||
| backend: "omp", | ||
| amps_layer: mpi1, | ||
| netcdf: "false" | ||
| } | ||
| - { | ||
| name: "Ubuntu 24.04 LLVM OASIS3-MCT Build", | ||
| os: ubuntu-24.04, | ||
| cudaos: 'ubuntu2204', | ||
| cc: "clang-18", cxx: "clang++-18", fc: "gfortran", | ||
| python: "false", | ||
| backend: "omp", | ||
| amps_layer: oas3, | ||
| netcdf: "true" | ||
| } | ||
| - { | ||
| name: "Ubuntu 22.04 GCC CUDA Build", | ||
| os: ubuntu-22.04, | ||
| cc: "gcc", cxx: "g++", fc: "gfortran", | ||
| python: "false", | ||
| backend: "cuda", | ||
| cudaos: 'ubuntu2204', | ||
| amps_layer: mpi1, | ||
| netcdf: "false" | ||
| } | ||
| - { | ||
| name: "Ubuntu 22.04 GCC Kokkos Build", | ||
| os: ubuntu-22.04, | ||
| cc: "gcc", cxx: "g++", fc: "gfortran", | ||
| python: "false", | ||
| backend: "kokkos", | ||
| cudaos: 'ubuntu2204', | ||
| amps_layer: mpi1, | ||
| netcdf: "false" | ||
| } | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Package Install | ||
| uses: awalsh128/cache-apt-pkgs-action@latest | ||
| with: | ||
| packages: gfortran hdf5-helpers tcl-dev tk-dev libcurl4 libcurl4-gnutls-dev | ||
| version: 1.0 | ||
| execute_install_scripts: true | ||
| - name: HDF5 and OpenMPI Install on Ubuntu 22.04 | ||
| if: matrix.config.os == 'ubuntu-20.04' || matrix.config.os == 'ubuntu-22.04' | ||
| run: | | ||
| sudo apt-get -qq update | ||
| sudo apt -qq install libhdf5-openmpi-103 libhdf5-openmpi-dev | ||
| # libhdf5-openmpi-103 has been renamed in Ubuntu 24.04. | ||
| - name: HDF5 and OpenMPI Install on Ubuntu 24.04 | ||
| if: matrix.config.os == 'ubuntu-24.04' | ||
| run: | | ||
| sudo apt-get -qq update | ||
| sudo apt -qq install libhdf5-openmpi-103-1t64 libhdf5-openmpi-dev | ||
| - name: LLVM 18.X Install | ||
| if: matrix.config.cc == 'clang-18' | ||
| run: | | ||
| sudo apt -qq install clang-18 libomp-18-dev | ||
| - name: Python Package Install | ||
| if: matrix.config.python == 'true' | ||
| run: | | ||
| sudo apt-get -qq update | ||
| sudo apt -qq install python3 python3-venv | ||
| # Cache dependencies so don't have to rebuild on each test. | ||
| # Can flush caches by resetting the CACHE_VERSION secret on GitHub | ||
| # settings for the project (using date-timestamp for secret). | ||
| - name: Cache dependencies | ||
| uses: actions/cache@v4 | ||
| id: cache-parflow-dependencies | ||
| env: | ||
| cache-name: cache-parflow-dependencies | ||
| cache-parflow-hit: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| with: | ||
| path: "~/depend" | ||
| key: cache-${{ matrix.config.os }}-${{ matrix.config.backend }}-${{ secrets.CACHE_VERSION }} | ||
| - name: Directory Setup | ||
| run: | | ||
| mkdir -p $HOME/install | ||
| # Set necessary vars | ||
| PARFLOW_DIR="$HOME/install" | ||
| PARFLOW_DEP_DIR="$HOME/depend" | ||
| LD_LIBRARY_PATH=${PARFLOW_DEP_DIR}/lib64:${PARFLOW_DEP_DIR}/lib | ||
| # Create folders | ||
| mkdir -p ${PARFLOW_DIR} ${PARFLOW_DEP_DIR}/{include,lib} | ||
| # Verify if paths were correctly set | ||
| echo "PARFLOW_DIR=${PARFLOW_DIR}" | ||
| echo "PARFLOW_DEP_DIR=${PARFLOW_DEP_DIR}" | ||
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" | ||
| # Vars pushed to GITHUB_ENV take effect only on the next CI steps. | ||
| echo "PARFLOW_DIR=${PARFLOW_DIR}" >> $GITHUB_ENV | ||
| echo "PARFLOW_DEP_DIR=${PARFLOW_DEP_DIR}" >> $GITHUB_ENV | ||
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> $GITHUB_ENV | ||
| echo "$HOME/depend/bin" >> $GITHUB_PATH | ||
| echo "$PARFLOW_DIR/bin" >> $GITHUB_PATH | ||
| - name: Configure OpenMPI backend compiler | ||
| run: | | ||
| export OMPI_CC=${{ matrix.config.cc }} | ||
| export OMPI_CXX=${{ matrix.config.cxx }} | ||
| export OMPI_FC=${{ matrix.config.fc }} | ||
| echo "OMPI_CC=${{ matrix.config.cc }}" >> $GITHUB_ENV | ||
| echo "OMPI_CXX=${{ matrix.config.cxx }}" >> $GITHUB_ENV | ||
| echo "OMPI_FC=${{ matrix.config.fc }}" >> $GITHUB_ENV | ||
| echo " mpicc: $(mpicc --version | head -n 1)" | ||
| echo " mpicxx: $(mpicxx --version | head -n 1)" | ||
| echo "mpifort: $(mpifort --version | head -n 1)" | ||
| - name: CMake Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| echo "Installing CMake v3.25.1" | ||
| cd $HOME/depend | ||
| echo "cache-${{ matrix.config.os }}-${{ matrix.config.backend }}-${{ secrets.CACHE_VERSION }}" > $HOME/depend/cache-key | ||
| wget -nv --no-check-certificate https://github.com/Kitware/CMake/releases/download/v3.25.1/cmake-3.25.1-linux-x86_64.tar.gz | ||
| tar -xf cmake-3.25.1-linux-x86_64.tar.gz | ||
| $HOME/depend/cmake-3.25.1-linux-x86_64/bin/cmake --version | ||
| fi | ||
| echo "$HOME/depend/cmake-3.25.1-linux-x86_64/bin" >> $GITHUB_PATH | ||
| - name: NVidia Driver Install | ||
| if: matrix.config.backend == 'cuda' || matrix.config.backend == 'kokkos' | ||
| run: | | ||
| sudo add-apt-repository -y ppa:graphics-drivers | ||
| sudo apt-get update -qq | ||
| sudo apt-get install -y nvidia-driver-440 | ||
| - name: CUDA Install | ||
| if: matrix.config.backend == 'cuda' || matrix.config.backend == 'kokkos' | ||
| run: | | ||
| export CUDA_VERSION_MAJOR_MINOR=11.8.0 | ||
| export CUDA_SHORT=11.8 | ||
| export CUDA_OS=${{ matrix.config.cudaos }} | ||
| ./bin/install-cuda.sh | ||
| export CUDA_HOME=/usr/local/cuda-${CUDA_SHORT} | ||
| echo "CUDA_HOME=${CUDA_HOME}" >> $GITHUB_ENV | ||
| export LD_LIBRARY_PATH=${CUDA_HOME}/lib64:${LD_LIBRARY_PATH} | ||
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> $GITHUB_ENV | ||
| export LIBRARY_PATH=${CUDA_HOME}/lib64/stubs | ||
| echo "LIBRARY_PATH=${LIBRARY_PATH}" >> $GITHUB_ENV | ||
| echo "${CUDA_HOME}/bin" >> $GITHUB_PATH | ||
| - name: UCX | ||
| if: matrix.config.backend == 'cuda' || matrix.config.backend == 'kokkos' | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| sudo apt install -qq -y autoconf automake libtool | ||
| URL=https://github.com/openucx/ucx/releases/download/v1.13.1/ucx-1.13.1.tar.gz | ||
| mkdir ucx | ||
| cd ucx | ||
| curl -L $URL | tar --strip-components=1 -xz | ||
| ./contrib/configure-release --with-cuda=$CUDA_HOME --with-java=no --with-go=no --disable-numa --prefix=$PARFLOW_DEP_DIR | ||
| make -j 2 install | ||
| fi | ||
| - name: RMM Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| if: matrix.config.backend == 'cuda' || matrix.config.backend == 'kokkos' | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| git clone -b branch-0.10 --single-branch --recurse-submodules https://github.com/rapidsai/rmm.git | ||
| cd rmm | ||
| cmake . -DCMAKE_CXX_FLAGS="-DTHRUST_IGNORE_DEPRECATED_CPP_DIALECT" -DCMAKE_INSTALL_PREFIX=$PARFLOW_DEP_DIR | ||
| make -j 2 install | ||
| fi | ||
| echo "RMM_FLAGS=-DRMM_ROOT=$PARFLOW_DEP_DIR" >> $GITHUB_ENV | ||
| - name: Kokkos Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| if: matrix.config.backend == 'kokkos' | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| URL=https://github.com/kokkos/kokkos/archive/refs/tags/4.2.01.tar.gz | ||
| mkdir kokkos | ||
| cd kokkos | ||
| curl -L $URL | tar --strip-components=1 -xz | ||
| mkdir build | ||
| cd build | ||
| cmake .. -DCMAKE_CXX_COMPILER=$(pwd)/../bin/nvcc_wrapper -DCMAKE_INSTALL_PREFIX=$PARFLOW_DEP_DIR -DKokkos_ENABLE_CUDA=On -DKokkos_ENABLE_CUDA_LAMBDA=On -DKokkos_ENABLE_CUDA_UVM=On -DKokkos_ARCH_VOLTA70=On | ||
| make -j 2 install | ||
| fi | ||
| echo "KOKKOS_FLAGS=-DKOKKOS_ROOT=$PARFLOW_DEP_DIR" >> $GITHUB_ENV | ||
| - name: OpenMPI Install for CUDA | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| if: matrix.config.backend == 'cuda' || matrix.config.backend == 'kokkos' | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| URL=https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.3.tar.gz | ||
| mkdir openmpi | ||
| cd openmpi | ||
| curl -L $URL | tar --strip-components=1 -xz | ||
| ./configure --with-cuda=$CUDA_HOME --with-ucx=$PARFLOW_DEP_DIR --prefix=$PARFLOW_DEP_DIR | ||
| sudo make -j 2 install | ||
| cd .. | ||
| fi | ||
| sudo ldconfig | ||
| # Package netcdf is missing features needed by the ParFlow writers, build from source | ||
| # netcdf is True when we want to build the PF NetCDF writer. OASIS is using the Fortran interface | ||
| # which is currently not built here. This is currently incompatible with the OASIS build which uses the NetCDF packages. | ||
| - name: NetCDF Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| if: matrix.config.netcdf == 'true' | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| URL=https://github.com/Unidata/netcdf-c/archive/v4.9.0.tar.gz | ||
| mkdir netcdf-c | ||
| cd netcdf-c | ||
| curl -L $URL | tar --strip-components=1 -xz | ||
| CC=mpicc CPPFLAGS=-I/usr/include/hdf5/openmpi LDFLAGS=-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi ./configure --prefix=$PARFLOW_DEP_DIR | ||
| make | ||
| make install | ||
| cd .. | ||
| URL=https://github.com/Unidata/netcdf-fortran/archive/v4.5.4.tar.gz | ||
| mkdir netcdf-fortran | ||
| cd netcdf-fortran | ||
| curl -L $URL | tar --strip-components=1 -xz | ||
| CC=mpicc FC=mpifort CPPFLAGS=-I${PARFLOW_DEP_DIR}/include LDFLAGS=-L${PARFLOW_DEP_DIR}/lib ./configure --prefix=${PARFLOW_DEP_DIR} | ||
| make | ||
| make install | ||
| fi | ||
| echo "NETCDF_FLAGS=-DNETCDF_DIR=$PARFLOW_DEP_DIR -DNETCDF_Fortran_ROOT=$PARFLOW_DEP_DIR -DPARFLOW_ENABLE_HDF5=TRUE" >> $GITHUB_ENV | ||
| - name: OASIS3-MCT Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| if: matrix.config.amps_layer == 'oas3' | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| git clone --depth 1 --branch OASIS3-MCT_5.1 https://gitlab.com/cerfacs/oasis3-mct.git | ||
| cd oasis3-mct | ||
| export OASIS_ROOT=$(pwd) | ||
| cd util/make_dir | ||
| echo 'include $(GITHUB_WORKSPACE)/misc/build_scripts/build.oasis3.ubuntu22.04' > make.inc | ||
| make realclean static-libs -f TopMakefileOasis3 | ||
| mv -v ${OASIS_ROOT}/install/include/* ${PARFLOW_DEP_DIR}/include/ | ||
| mv -v ${OASIS_ROOT}/install/lib/* ${PARFLOW_DEP_DIR}/lib/ | ||
| fi | ||
| - name: SILO Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| URL=https://github.com/LLNL/Silo/archive/refs/tags/4.11.tar.gz | ||
| mkdir silo | ||
| cd silo | ||
| curl -L $URL | tar --strip-components=1 -xz | ||
| ./configure --disable-silex --disable-hzip --disable-fpzip --prefix=$PARFLOW_DEP_DIR | ||
| make -j 2 install | ||
| fi | ||
| - name: HYPRE Install | ||
| env: | ||
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | ||
| run: | | ||
| if [[ "$CACHE_HIT" != 'true' ]]; then | ||
| URL=https://github.com/hypre-space/hypre/archive/v2.26.0.tar.gz | ||
| mkdir hypre | ||
| cd hypre | ||
| curl -L $URL | tar --strip-components=1 -xz | ||
| cd src | ||
| ./configure --prefix=$PARFLOW_DEP_DIR | ||
| make -j 2 install | ||
| fi | ||
| - name: ParFlow CMake Configure | ||
| run: | | ||
| cat $HOME/depend/cache-key | ||
| export OMPI_MCA_rmaps_base_oversubscribe=1 | ||
| export OMP_NUM_THREADS=1 | ||
| ${{ matrix.config.cc }} -v | ||
| mpicc -v | ||
| if [[ "${{ matrix.config.amps_layer }}" == "oas3" ]]; then HAVE_CLM="OFF"; else HAVE_CLM="ON"; fi | ||
| CFLAGS="-Wall -Werror -Wno-unused-result -Wno-unused-function -Wno-stringop-overread" | ||
| if [[ "${{ matrix.config.cc }}" == "gcc" ]]; then CFLAGS="${CFLAGS} -Wno-stringop-overread"; fi | ||
| export CC=mpicc CXX=mpicxx F77=mpif77 FC=mpif90 | ||
| export NVCC_PREPEND_FLAGS="-ccbin=$(which mpicc)" | ||
| cmake -Bbuild \ | ||
| -DCMAKE_BUILD_TYPE=Release \ | ||
| -DCMAKE_C_FLAGS=$CFLAGS \ | ||
| -DPARFLOW_ENABLE_TIMING=TRUE \ | ||
| -DPARFLOW_AMPS_LAYER=${{ matrix.config.amps_layer }} \ | ||
| -DMPIEXEC_POSTFLAGS='--oversubscribe' \ | ||
| -DPARFLOW_ACCELERATOR_BACKEND=${{ matrix.config.backend }} \ | ||
| -DPARFLOW_AMPS_SEQUENTIAL_IO=true \ | ||
| -DPARFLOW_HAVE_CLM=${HAVE_CLM} \ | ||
| -DHYPRE_ROOT=$PARFLOW_DEP_DIR \ | ||
| -DOAS3_ROOT=$PARFLOW_DEP_DIR \ | ||
| -DSILO_ROOT=$PARFLOW_DEP_DIR \ | ||
| -DPARFLOW_ENABLE_PYTHON=${{ matrix.config.python }} \ | ||
| -DCMAKE_INSTALL_PREFIX=$PARFLOW_DIR \ | ||
| $NETCDF_FLAGS $KOKKOS_FLAGS $RMM_FLAGS | ||
| - name: ParFlow CMake Build | ||
| run: (cd build; make -j 2 install) | ||
| # Can't test with GPU since have no GPU hardware on testing nodes, GPU test is build only | ||
| - name: ParFlow CTest | ||
| if: matrix.config.backend != 'cuda' && matrix.config.backend != 'kokkos' | ||
| run: | | ||
| export OMPI_MCA_rmaps_base_oversubscribe=1 | ||
| export OMP_NUM_THREADS=1 | ||
| (cd build; ctest --output-on-failure) | ||
