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1. Je Je Public

   a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs

   Java 5 6

2. dropSeqPipe dropSeqPipe Public

   Forked from Hoohm/dropSeqPipe

   A SingleCell RNASeq pre-processing pipeline built on snakemake

   R 1

3. single-cell-rna-seq single-cell-rna-seq Public

   Forked from snakemake-workflows/single-cell-rna-seq

   A single cell RNA-seq workflow following http://dx.doi.org/10.12688/f1000research.9501.2

   HTML

4. rna-seq-star-deseq2 rna-seq-star-deseq2 Public

   Forked from snakemake-workflows/rna-seq-star-deseq2

   RNA-seq workflow using STAR and DESeq2

   HTML

5. dna-seq-gatk-variant-calling dna-seq-gatk-variant-calling Public

   Forked from snakemake-workflows/dna-seq-gatk-variant-calling

   This Snakemake pipeline implements the GATK best-practices workflow

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6. bioconda-recipes bioconda-recipes Public

   Forked from bioconda/bioconda-recipes

   Conda recipes for the bioconda channel.

   Shell