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@gencorefacility

gencorefacility

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  1. variant-calling-pipeline-gatk4 variant-calling-pipeline-gatk4 Public

    Variant Calling Pipeline Using GATK4 and Nextflow

    Nextflow 48 47

  2. MAD MAD Public

    Minor Allele Detection Pipeline for SARS-CoV2

    Python 1 1

  3. reform reform Public

    Modify existing reference fasta and gff3/gtf files to include a new sequence

    Python 27 5

  4. r-notebooks r-notebooks Public

    Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

    17 24

  5. covid19 covid19 Public

    Variant Analysis Pipeline for COVID19

    Nextflow 4 1

Repositories

Showing 10 of 15 repositories
  • GENEFLOW Public

    Genomic Examination and Nucleotide Evaluation For Laboratory Operations Workflow

    gencorefacility/GENEFLOW’s past year of commit activity
    Python 0 1 4 2 Updated Jul 12, 2024
  • reform Public

    Modify existing reference fasta and gff3/gtf files to include a new sequence

    gencorefacility/reform’s past year of commit activity
    Python 27 5 1 3 Updated Jul 8, 2024
  • reformWeb Public

    Flask WebUI for reform

    gencorefacility/reformWeb’s past year of commit activity
    Python 0 2 0 0 Updated Jun 12, 2024
  • hpc-gatk4 Public
    gencorefacility/hpc-gatk4’s past year of commit activity
    Nextflow 0 0 1 0 Updated Jul 13, 2023
  • variant-calling-pipeline-gatk4 Public

    Variant Calling Pipeline Using GATK4 and Nextflow

    gencorefacility/variant-calling-pipeline-gatk4’s past year of commit activity
    Nextflow 48 47 1 1 Updated Feb 16, 2023
  • MAD2 Public
    gencorefacility/MAD2’s past year of commit activity
    Python 0 0 0 0 Updated Jul 27, 2022
  • MAD Public

    Minor Allele Detection Pipeline for SARS-CoV2

    gencorefacility/MAD’s past year of commit activity
    Python 1 1 0 0 Updated Jul 15, 2021
  • covid19 Public

    Variant Analysis Pipeline for COVID19

    gencorefacility/covid19’s past year of commit activity
    Nextflow 4 1 0 0 Updated Apr 30, 2021
  • ReSeq Public Forked from schmeing/ReSeq

    More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original

    gencorefacility/ReSeq’s past year of commit activity
    C++ 0 MIT 3 0 0 Updated Feb 13, 2021
  • mpileupplugin Public Forked from cmdcolin/mpileupplugin

    A JBrowse plugin for plotting allele fraction data

    gencorefacility/mpileupplugin’s past year of commit activity
    JavaScript 0 1 0 0 Updated Jun 19, 2020
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