Update gorules_test_errors.gaf

geneontology · Jul 26, 2024 · ea1d4af · ea1d4af
1 parent 5b6a56a
commit ea1d4af
Showing 1 changed file with 8 additions and 2 deletions.
diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf
@@ -167,10 +167,16 @@ WormBase	WBGene0000002	aat-1	part_of	GO:1990184	WB_REF:WBPaper00006408|PMID:1466
 WormBase	WBGene00000002|WBGene00000003	aat-1	part_of	GO:1990184	WB_REF:WBPaper00006408|PMID:14668347	IPI	WB:WBGene00000225	C		GORULE_TEST:0000027-8 F27C8.1	gene	taxon:6239	20131022	GO_Central		
 ! SHOULD PASS GORULE:0000027 - TEST 9 - 2 values in with field, pipe-separated															
 UniProtKB	Q6UW15	REG3G	involved_in	GO:0006401	PMID:16931762	IGI	UniProtKB:P77335|UniProtKB:A0A0K3AV08	P	GORULE_TEST:0000027-9 Regenerating islet-derived protein 3-gamma	REG3G|PAP1B|UNQ429/PRO162	protein	taxon:9606	20220606	GO_Central	
-! FAILS GORULE:0000027 - TEST 10 - 2 values in with field, comma-separated															
+! FAILS GORULE:0000027 - TEST 10 - 2 values in 'with' field, comma-separated															
 UniProtKB	Q6UW15	REG3G	involved_in	GO:0006401	PMID:16931762	IGI	UniProtKB:P77335,UniProtKB:A0A0K3AV08	P	GORULE_TEST:0000027-10 Regenerating islet-derived protein 3-gamma	REG3G|PAP1B|UNQ429/PRO162	protein	taxon:9606	20220606	GO_Central	
-! FAILS GORULE:0000027 - TEST 11 - 2 values in with field, second namespace missing															
+! FAILS GORULE:0000027 - TEST 11 - 2 values in 'with' field, second namespace missing															
 UniProtKB	Q6UW15	REG3G	involved_in	GO:0006401	PMID:16931762	IGI	UniProtKB:P77335|A0A0K3AV08	P	GORULE_TEST:0000027-11 Regenerating islet-derived protein 3-gamma	REG3G|PAP1B|UNQ429/PRO162	protein	taxon:9606	20220606	GO_Central	
+! FAILS GORULE:0000027 - TEST 12 - 'with' prefix not in /db-xrefs.yaml															
+UniProtKB	Q6UW15	REG3G	involved_in	GO:0006401	PMID:16931762	IGI	UniPotKB:P77335	P	GORULE_TEST:0000027-12 Regenerating islet-derived protein 3-gamma	REG3G|PAP1B|UNQ429/PRO162	protein	taxon:9606	20220606	GO_Central	
+! FAILS GORULE:0000027 - TEST 13 - 'with' Prefix is a synonyms in /db-xrefs.yaml and IS REPAIRED													
+FB	FBgn0020238	14-3-3epsilon	involved_in	GO:0006401	PMID:16931762	IGI	FLYBASE:FBgn0004907	P	GORULE_TEST:0000027-13 14-3-3epsilon	14-3-3|14-3-3 epsilon|14-3-3 protein epsilon	protein	taxon:7227	20220606	GO_Central	
+! FAILS GORULE:0000027 - TEST 14 - 'bad with' id syntax  - should have 7 digits, has 8													
+FB	FBgn0020238	14-3-3epsilon	involved_in	GO:0006401	PMID:16931762	IGI	FLYBASE:FBgn10004907	P	GORULE_TEST:0000027-13 14-3-3epsilon	14-3-3|14-3-3 epsilon|14-3-3 protein epsilon	protein	taxon:7227	20220606	GO_Central	
 ! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P														
 UniProtKB	Q9HC96	CAPN10	involved_in	GO:0006921	PMID:23072806	IDA		C	GORULE_TEST:0000028-1 Calpain-10	CAPN10,KIAA1845	protein	taxon:9606	20140213	GO_Central	
 ! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P