Merge pull request #60 from geneontology/feb_updates

tighten the constraint aroudn MGI provided_by in GOA laod
geneontology · Mar 19, 2024 · 212a95b · 212a95b
2 parents b3f6d46 + aa8f151
commit 212a95b
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/src/gopreprocess/file_processors/gaf_processor.py b/src/gopreprocess/file_processors/gaf_processor.py
@@ -163,12 +163,13 @@ def parse_p2g_gaf(self):
                 for source_assoc in annotation.associations:
                     if isinstance(source_assoc, dict):
                         continue  # skip the header
+                    if self.source == "GOA" and source_assoc.provided_by == self.taxon_to_provider[self.target_taxon]:
+                        continue
                     if (
                         self.source == "GOA"
                         and source_assoc.evidence.has_supporting_reference == "GO_REF:0000033"
                         and (
-                            source_assoc.provided_by == self.taxon_to_provider[self.target_taxon]
-                            or source_assoc.provided_by == "GO_Central"
+                            source_assoc.provided_by == "GO_Central"
                             or source_assoc.provided_by == "GOC"
                         )
                     ):