Merge pull request #46 from geneontology/feb_updates

condense makefile
geneontology · Mar 14, 2024 · 401864c · 401864c
2 parents 94e576e + 2158c39
commit 401864c
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/Makefile b/Makefile
@@ -3,7 +3,7 @@ SHELL := bash
 .SHELLFLAGS := -eu -o pipefail -c
 .DEFAULT_GOAL := help
 
-all: install test download_human download_rat convert_human convert_rat get_goa_files merge_gafs
+all: install test run
 
 dev: install
 
@@ -70,4 +70,4 @@ get_gpad:
 
 merge_files: merge_gafs
 
-kit_and_kaboodle: download_human download_rat convert_human convert_rat convert_p2g_annotations merge_gafs get_gpad
+run: download_human download_rat convert_human convert_rat convert_p2g_annotations merge_gafs validate_merged_gafs
diff --git a/src/gopreprocess/cli.py b/src/gopreprocess/cli.py
@@ -93,6 +93,7 @@ def check_errors(errors: list) -> int:
         summary.append(f"Rule: {rule}, Message: '{message}', Errors: {count}")
 
     print(summary)
+    click.echo(summary)
 
 
 @cli.command(name="convert_annotations")