Merge pull request #74 from geneontology/sierra-moxon-patch-2

Update README.md

README.md

@@ -13,24 +13,6 @@ annotations that can be converted to mouse via orthology, and the mouse annotati
 make run
 ```
 
-`make all` will download the necessary upstream files like the Human & Human Isoform annotations, the Rat annotations,
-the MGI GPI file, the Alliance orthology file, the Mouse Xref file and the Gene Ontology in JSON format. It will then
-run the orthology annotation conversion step for each species, finally combining the resulting GAFs with the Protein2GO
-# gopreprocess
-
-This repo holds parsing and GAF generation code for generating automatic annotations based on orthology, or based on
-upstream products from Protein2GO.
-
-The Makefile helps coordinate the process for a single species, but each step can be run independently.
-
-For example, running this preprocessing pipeline for MGI to create a single GAF 2.2 file that represents
-all the automated annotations that the GO Consortium will consume for mouse (this includes the human and rat
-annotations that can be converted to mouse via orthology, and the mouse annotations created by Protein2GO):
-
-```bash
-make run
-```
-
 `make all` will download the necessary upstream files like the Human & Human Isoform annotations, the Rat annotations,
 the MGI GPI file, the Alliance orthology file, the Mouse Xref file and the Gene Ontology in JSON format. It will then
 run the orthology annotation conversion step for each species, finally combining the resulting GAFs with the Protein2GO