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Merge pull request #184 from geneontology/zfin_import_models
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Zfin import models
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@kltm
kltm committed Jul 22, 2021
2 parents 64a6d50 + 2ef1ce1 commit 1e0920a
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17 changes: 17 additions & 0 deletions .github/workflows/run-tests.yml
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name: run-owltools-test
on: [push]

jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2

- name: Run tests
run: |
mkdir -p bin
export PATH=$PATH:$PWD/bin
wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools -O bin/owltools
wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools-oort-all.jar -O bin/owltools-runner-all.jar
chmod +x bin/*
make travis-test
13 changes: 8 additions & 5 deletions .travis.yml
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@@ -1,12 +1,15 @@
language: java
jdk:
- oraclejdk8
dist: xenial

before_install:
- sudo apt-get update
- sudo apt-get install -y wget

before_script:
- mkdir -p bin
- export PATH=$PATH:$PWD/bin
- wget http://build.berkeleybop.org/userContent/owltools/owltools -O bin/owltools
- wget http://build.berkeleybop.org/userContent/owltools/owltools-runner-all.jar -O bin/owltools-runner-all.jar
- wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools -O bin/owltools
- wget https://github.com/owlcollab/owltools/releases/download/2020-04-06/owltools-oort-all.jar -O bin/owltools-runner-all.jar
- chmod +x bin/*

# command to run tests
Expand All @@ -22,5 +25,5 @@ branches:

notifications:
email:
- cjmungall@lbl.gov
- sjcarbon@lbl.gov

14 changes: 7 additions & 7 deletions models/593423e000000023.ttl
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Expand Up @@ -138,14 +138,14 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
# Classes
#################################################################

### http://identifiers.org/zfin/ZDB-GENE-090929-156
<http://identifiers.org/zfin/ZDB-GENE-090929-156> rdf:type owl:Class ;
<http://www.geneontology.org/formats/oboInOwl#id> "ZFIN:ZDB-GENE-090929-156"^^xsd:string .
### http://identifiers.org/zfin/ZDB-MIRNAG-090929-156
<http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> rdf:type owl:Class ;
<http://www.geneontology.org/formats/oboInOwl#id> "ZFIN:ZDB-MIRNAG-090929-156"^^xsd:string .

[ rdf:type owl:Axiom ;
owl:annotatedSource <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
owl:annotatedSource <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
owl:annotatedProperty <http://www.geneontology.org/formats/oboInOwl#id> ;
owl:annotatedTarget "ZFIN:ZDB-GENE-090929-156"^^xsd:string ;
owl:annotatedTarget "ZFIN:ZDB-MIRNAG-090929-156"^^xsd:string ;
<http://geneontology.org/lego/derived> "true"^^xsd:string
] .

Expand All @@ -172,7 +172,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .

### http://model.geneontology.org/593423e000000023/593423e000000752
<http://model.geneontology.org/593423e000000023/593423e000000752> rdf:type owl:NamedIndividual ,
<http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
<http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1009-339X"^^xsd:string ;
<http://purl.org/dc/elements/1.1/date> "2017-06-04"^^xsd:string ;
<http://purl.org/pav/providedBy> "http://geneontology.org"^^xsd:string .
Expand Down Expand Up @@ -232,7 +232,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .

### http://model.geneontology.org/593423e000000023/593423e000000761
<http://model.geneontology.org/593423e000000023/593423e000000761> rdf:type owl:NamedIndividual ,
<http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
<http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1009-339X"^^xsd:string ;
<http://purl.org/dc/elements/1.1/date> "2017-06-04"^^xsd:string ;
<http://purl.org/pav/providedBy> "http://geneontology.org"^^xsd:string .
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8 changes: 4 additions & 4 deletions models/5966411600000170.ttl
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Expand Up @@ -77,7 +77,7 @@

<http://identifiers.org/zfin/ZDB-GENE-070912-124> a <http://www.w3.org/2002/07/owl#Class> .

<http://identifiers.org/zfin/ZDB-GENE-090929-156> a <http://www.w3.org/2002/07/owl#Class> .
<http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> a <http://www.w3.org/2002/07/owl#Class> .

<http://identifiers.org/zfin/ZDB-GENE-091027-1> a <http://www.w3.org/2002/07/owl#Class> .

Expand Down Expand Up @@ -167,7 +167,7 @@
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2021-02-02"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5966411600000170/5966411600000198> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
<http://model.geneontology.org/5966411600000170/5966411600000198> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2017-07-12"^^<http://www.w3.org/2001/XMLSchema#string> .

Expand Down Expand Up @@ -259,7 +259,7 @@
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2021-02-02"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5966411600000170/596a6e0600000057> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
<http://model.geneontology.org/5966411600000170/596a6e0600000057> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2017-07-17"^^<http://www.w3.org/2001/XMLSchema#string> .

Expand All @@ -274,7 +274,7 @@
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2021-02-02"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5966411600000170/596a6e0600000060> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-GENE-090929-156> ;
<http://model.geneontology.org/5966411600000170/596a6e0600000060> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/zfin/ZDB-MIRNAG-090929-156> ;
<http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-4142-7153"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2017-07-17"^^<http://www.w3.org/2001/XMLSchema#string> .

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