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88 Open 215 Closed
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Issues list

Experiment with piecemeal transition to GOA "upstreams" enhancement
#406 opened Oct 28, 2024 by kltm
@pgaudet
Switch PANTHER trees to version 19.0
#399 opened Oct 10, 2024 by dustine32
3 tasks done
@dustine32
3
Ensure that the relation map used by ontobio in sync with the current state of the ontology enhancement
#398 opened Oct 9, 2024 by kltm
2
GPAD 1.2 to GPAD 2.0 seems to make an error with some relations bug (B: affects usability)
#397 opened Oct 8, 2024 by kltm
10
Make downloads pages for new species-oriented upstreams
#396 opened Oct 3, 2024 by kltm
Clarify the "pass back" process for ontology and metadata
#394 opened Oct 2, 2024 by kltm
Assemble final second stage post-GOA with derivatives-from-goa pipeline
#393 opened Oct 2, 2024 by kltm
Make sure that stakeholders understand compounding index issues with larger data set
#392 opened Oct 2, 2024 by kltm
Test generation of blazegraph on larger products set
#391 opened Oct 2, 2024 by kltm
Ensure that larger product set can be preserved in long-term storage (currently Zenodo)
#390 opened Oct 2, 2024 by kltm
Remove skyhook's confinement-for-pipeline-388
#389 opened Oct 2, 2024 by kltm
@kltm
Explore adding the "complicated" (full provenance) GAF 2.2 header to the GPAD 2.0 bug (C: surface issue)
#387 opened Sep 30, 2024 by kltm
@sierra-moxon
4
Rolling ontology build should have a time stamp
#384 opened Jul 25, 2024 by pgaudet
3
Create a "non-data" full release pipeline (ontology metadata curation only) enhancement
#382 opened Jul 23, 2024 by kltm
@kltm
7
Close out no-longer-relevant pipeline tickets enhancement
#381 opened Jul 23, 2024 by kltm
Storing noctua model in github has reached another limit bug (A: showstopper)
#378 opened Jun 25, 2024 by kltm
As pipeline(s) stabilize, increase frequency and automation enhancement
#371 opened Apr 8, 2024 by kltm
@kltm
3
Project review (last activity) documentation
#368 opened Apr 4, 2024 by kltm
3
Imported ComplexPortal IDs not resolving as SGD IDs
#364 opened Mar 21, 2024 by suzialeksander
8
incomplete file filtered_goa_uniprot_all_noiea.gpad.gz bug (B: affects usability)
#365 opened Feb 8, 2024 by francoiscoste
5
Buy and setup a new pipeline machine enhancement
#351 opened Jan 17, 2024 by kltm
@kltm
8
Explore getting the pipeline completing again by adjusting settings and runtime parameters bug (B: affects usability)
#349 opened Dec 12, 2023 by kltm
3
Can no longer upload to Zenodo; due to recent Zenodo update? bug (A: showstopper)
#345 opened Nov 18, 2023 by kltm
6
WormBase upstream having issues; use bypass and revert when ready bug (B: affects usability)
#338 opened Sep 25, 2023 by kltm
@vanaukenk
6
Switch noctua-models GitHub checkout to be the same as the ontology checkout
#335 opened Aug 30, 2023 by kltm
ProTip! Exclude everything labeled bug with -label:bug.